Published July 30, 2022
| Version v3.0.2
Software
Open
stevemussmann/admixturePipeline: Admixpipe v3.0.2
Creators
- 1. U.S. Fish & Wildlife Service
- 2. Biomathematics and Statistics Scotland (BioSS)/ The James Hutton Institute (JHI)
Description
New features:
- cvSum.py now calculates summary statistics and plots for loglikelihood values. This is done for both major and minor clusters identified by CLUMPAK
Bug fixes:
- Changed import order of pandas and matplotlib in graphics.py. The previous order was causing cvSum.py to crash on some systems.
- Fixed a bug in distructRerun.py that could potentially cause duplication of CV values if distructRerun.py was run on the same dataset multiple times.
Other changes:
- Removed some legacy code from admixturePipeline.py that was no longer being used (i.e., system calls to grep commands that were printing CV and loglikelihood values to files).
Files
stevemussmann/admixturePipeline-v3.0.2.zip
Files
(45.6 MB)
| Name | Size | Download all |
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md5:5d17a69c2b7ccd7fbb54682ecc23b459
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Additional details
Related works
- Is supplement to
- https://github.com/stevemussmann/admixturePipeline/tree/v3.0.2 (URL)