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Published July 29, 2022 | Version 2.0.1
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PHIRI - WP6 - Use Case C scripts for local analyses (R Markdown)

  • 1. INSERM
  • 2. Health Sciences Institute in Aragon (IACS)
  • 1. Health Sciences Institute in Aragon
  • 2. Health Sciences Institute in Aragon (IACS)

Description

The PHIRI Federated Research Infrastructure (FRI) is supported by a containerized reproducible solution for data analysis to be deployed on-premises by each participant partner (a.k.a PHIRI-app).

This solution is based on the identification of the relevant data sources for each cases study (including the demonstration pilot), the development of the common data models and the analytical pipelines, and enables the FAIR reporting of the rapid cycle outputs.

The R Markdown script is provided, integrated within the PHIRI-app, for PHIRI Use Case C local analyses. 

Here, the R Markdown script is provided with:

a) synthetic dataset build following the specifications from the Use Case C Common Data Model

b) instructions on where to find the synthetic dataset within the Use Case C Common Data Model description (HTML), and

c) an HTML interactive report produced by performing the analyses proposed within the R Markdown using the synthetic dataset above. 

These elements are provided to facilitate collaboration on testing and improving the Use Case C analytical pipeline within the scope of PHIRI WP6

If you wish to contribute to the development of the PHIRI - Use Case C analysis, please contact the WP6 Coordinator through the PHIRI website

Notes

The script (software) is offered "as-is", without warranty, and disclaims liability for damages resulting from using it. Software is released under the CC-BY-4.0 licence, which gives you permission to use the content for almost any purpose (but does not grant you any trademark permissions), so long as you note the license and give credit.

Files

PHIRI_WP7_where_to_find_synthetic_dataset_for_testing.pdf

Files (6.7 MB)

Name Size Download all
md5:1f9c609ee9d09c2e221ca421f2ac9d7a
1.5 MB Download
md5:1b47ae7e2efe93dc578795a280b220fc
17.8 kB Download
md5:7ad3d08077b3a2105d9d2c233d1ed02a
10.2 kB Download
md5:1639343d41c6eaff5c90c2ed136c1855
50.6 kB Download
md5:3338a1de70cff5517f655818ca146735
4.1 MB Preview Download
md5:e05ba3d90506c4a3d2a39cfae0764200
1.0 MB Preview Download

Additional details

Related works

Is required by
Software: 10.5281/zenodo.5729310 (DOI)
Requires
Other: 10.5281/zenodo.5148031 (DOI)

Funding

PHIRI – Population Health Information Research Infrastructure 101018317
European Commission