ACRG-Bristol/acrg: ACRG v0.2.0

ACRG standardisation and inversion code v0.2.0

Added

• Ability to convert calibration scale in get_obs
• New "defaults" file that specifies inlets and instruments to use for particular time periods
• An obs.db SQLite database that specifies the location of all obs files and basic details about their contents (species, inlet, time range, etc.)
• notebooks directory for Jupyter notebooks
• notebooks/tutorials directory for notebook based tutorials
• a tmp directory to store random job script output files
• added a dev environment that includes spyder and a lighter environment that does not

Changed

• get_single_site now returns a list of xarray datasets, one for each combination of inlet and site. If defaults are specified, the list will contain the default instruments and inlets for each period
• get_obs now returns a dictionary containing lists of datasets
• calibration scale and inlet are now attributes to obs datasets (e.g. ds.attrs["scale"])
• fp_data_merge now works with new get_obs object
• The flux function will now look for species-total.nc named files first and then look for species.nc files. This will not be able to read both files. This can still accept an more explicit source such as co2-ff_*.nc as an alternative to this.
• arviz package version pinned to prevent conflict with pymc3 version