MIT-LCP/mimic-code: MIMIC Code v2.2.1

This release updates the MIMIC Code repository to align with MIMIC-IV v2.0. It also contains many bug fixes.

Change log:

• This version (v2.2.1) fixes a bug in the workflow generating tables on BigQuery occurring in v2.2.0. The rest of the changes below are in comparison to v2.1.1.
• Build MIMIC scripts
  • Updated PostgreSQL build scripts for MIMIC-IV v2.0 (#1328, thanks @alexmbennett2)
  • Added SQLite build of MIMIC-IV (thanks @armando-fandango) and updated for MIMIC-IV v2.0
  • Fixed MySQL build code (thanks @mdsung) and updated for MIMIC-IV v2.0
  • Updated DuckDB code to work with MIMIC-IV v2.0
• Concept improvements
  • The generation of BigQuery tables by the GitHub action no longer prints rows to the standard output
  • Fixed incompatibility of convert_bigquery_to_postgres.sh on Mac OS X. The script should run on both Mac OS X and Ubuntu now.
  • Fixed imputation of cell counts (#1208, thanks @duanxiangjie)
  • Added an initial concept mapping of labs to LOINC (thanks @a-chahin). This mapping will continue to be improved in this repository.
  • Fixed matching of GCS value with prior value in the last 6 hours (#1248, thanks @prockenschaub)
  • Added mapping tables for standard concepts for waveform data (#1321 and #1322, thanks @a-chahin)

Full Changelog: https://github.com/MIT-LCP/mimic-code/compare/v2.1.1...v2.2.1