Published June 17, 2022 | Version v1
Dataset Open

Supplementary Data: OpenCOVID model output underlaying Figures 1 and 2 of "Modelling the impact of Omicron and emerging variants on SARS-CoV-2 transmission and public health burden"

  • 1. Swiss Tropical and Public Health Institute

Description

Supplementary data files Figure_1.xlsx and Figure_2.xlsx contain the model simulation outcomes for Figures 1 and 2 of Le Rutte, Shattock et al "Modelling the impact of Omicron and emerging variants on SARS-CoV-2 transmission and public health burden" (2022)

  • Figure 1: Peak daily hospital occupancy (number of beds per 100,000 population over the six-month simulation period) for three variant properties; infectivity (relative to Delta), immune evading capacity (%), and severity (relative to Delta)
     
  • Figure 2: Percentage of COVID-19 infections and deaths averted by third-dose vaccines for adults and vaccinating 5-11-year-olds with doses one and two.
     
  • Open access source-codes of the associated plotting functions are published here on Zenodo.
     
  • Open access source-codes for the OpenCOVID model of all analyses as presented in Le Rutte, Shattock et al. (2022) are publicly available at https://github.com/SwissTPH/OpenCOVID/tree/manuscript_december_2021/src.
     
  • Detailed model descriptions and model equations of individual-based transmission model OpenCOVID are described in Shattock et al. (2022) and Le Rutte, Shattock et al. (2022).

Files

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Additional details

References

  • Epke A Le Rutte, Andrew J Shattock, Nakul Chitnis, Sherrie L Kelly, Melissa A Penny, The potential impact of Omicron and future variants of concern on SARS-CoV-2 transmission dynamics and public health burden: a modelling study. medRxiv 2021.12.12.21267673; doi: https://doi.org/10.1101/2021.12.12.21267673