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Published May 20, 2022 | Version v3
Journal article Open

Example dataset for Tracking Metrics using TrackMate and Oneat

Creators

  • 1. Kapoorlabs, University of Copenhagen

Description

In this dataset we compare the automated tracking results using the standard TrackMate algorithms for frame to frame and segment to segment linking with the ground truth dataset. Furthermore we use Oneat to correct the branches of the lineage trees and using oneat as TrackCorrector we recompute the metrics to show improvements over TrackMate track linking algorithms.

Notes

Computational support provided by Jean Zay dynamic access grant: AD011013396, oneat model training and evaluation was performed on Jean Zay compute nodes

Files

oneat_detections.zip

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