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Published May 12, 2022 | Version v3.0.1
Software Open

griffithlab/pVACtools: 3.0.1

Creators

  • 1. The McDonnell Genome Institute at Washington University
  • 2. Washington University
  • 3. McDonnell Genome Institute
  • 4. The McDonnell Genome Institute at Washington University School of Medicine
  • 5. KSG at DFCI
  • 6. Washington University in St Louis
  • 7. @genome, @griffithlab
  • 8. Washington University School of Medicine
  • 9. Color
  • 10. Global Gene Corp

Description

This is a bugfix release. It fixes the following problem(s):

  • There was small issue in pVACview where picking a different number of variants in the main table would cause changes to variant evaluations to not be recorded correctly.
  • This release also fixes a problem where loading a new set of files into pVACview would not reset previous evaluation summary counts.
  • This release fixes an error in pVACtools that would occur when a chromosomal region in the somatic VCF is not present in the proximal VCF.
  • This release adds further error checking for malformed CSQ header descriptions.
  • This release updates various code portions to remove deprecation warnings and add support for newer versions of certain dependencies (e.g. pandas).
  • This release fixes an bug with the standalone pvacseq calculate_reference_proteome_similarity command where picking a custom --match-length would throw an error.
  • Some users were reporting errors during the tmp file cleanup stages of running the various pipelines. This releases fixes that issue.

Files

griffithlab/pVACtools-v3.0.1.zip

Files (251.4 MB)

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md5:5418d0292c341f0618a16eba31419e6b
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Additional details

Related works

Is supplement to
https://github.com/griffithlab/pVACtools/tree/v3.0.1 (URL)