Published May 8, 2022
| Version v1
Software
Open
OpenCOVID plotting functions for "Modelling the impact of Omicron and emerging variants on SARS-CoV-2 transmission and public health burden"
Creators
- 1. Swiss Tropical and Public Health Institute
Description
- File manuscript.R calls a series of inbuilt OpenCOVID plotting functions that create all figures for the paper of Le Rutte, Shattock et al. (2022): Modelling the impact of Omicron and emerging variants on SARS-CoV-2 transmission and public health burden. Both for Figures 1 and 2 of the main manuscript as well as the Figures from the Supplementary Information.
- File plotting.R defines these inbuilt plotting functions.
- Detailed model descriptions and model equations of individual-based transmission model OpenCOVID are described in Shattock et al. (2022) and Le Rutte, Shattock et al. (2022).
- Open access source-codes for the OpenCOVID model of all analyses as presented in Le Rutte, Shattock et al. (2022) are publicly available at https://github.com/SwissTPH/OpenCOVID/tree/manuscript_december_2021/src.
Notes
Funding for the study was provided by the Botnar Research Centre for Child Health (to MAP) and the Swiss National Science Foundation Professorship of MAP (PP00P3_170702).
Files
Files
(90.0 kB)
| Name | Size | Download all |
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md5:5531558d4674f2a21b29862f66a1ac45
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26.1 kB | Download |
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md5:edaab0ca631a6ea9a75159db73a99759
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63.9 kB | Download |
Additional details
Related works
- Is cited by
- Preprint: https://www.medrxiv.org/content/10.1101/2021.12.12.21267673v2 (URL)
- Is supplement to
- Software documentation: https://github.com/SwissTPH/OpenCOVID/tree/manuscript_december_2021/src (URL)
References
- Le Rutte, E. A., Shattock, A. J., Chitnis, N., Kelly, S. L. & Penny, M. A. The potential impact of Omicron and future variants of concern on SARS-CoV-2 transmission dynamics and public health burden: a modelling study. medRxiv 2021.12.12.21267673 (2022). doi:10.1101/2021.12.12.21267673