Published May 9, 2022
| Version v2
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Comparison of Methods and Resources for Cell-cell Communication Inference from Single-cell RNA-Seq Data (Source and Output Data)
Creators
- 1. Heidelberg University, Faculty of Medicine, and Heidelberg University Hospital, Institute for Computational Biomedicine, BioQuant
- 2. Joint Research Center for Computational Biomedicine, RWTH Aachen University Hospital
- 3. Faculty of Medicine, Department of Physiology, Semmelweis University
- 4. Roche Pharma Research and Early Development, Pharmaceutical Sciences, Roche Innovation Center Basel
Description
Repository with all of the source data for both main text and supplemental figures, along with related output data, from the "Comparison of Methods and Resources for Cell-cell Communication Inference from Single-cell RNA-Seq Data" manuscript.
resource_source_data.RDS - Figures 3 & 4, and Supp. Figures 1-11.
aggregates/ - Aggregated liana output. Used throughout the comparisons and evaluations of the methods.
comparison_out/ - Figure 5; Supp. Figures 12 & 16-24.
robustness_plots.RDS - Supp. Figures 13
cytosig_out/ - Figure6A & Supp. Figure 14
spatial_out/ - Figure 6B & Supp. Figure 15
citeseq_out/ - Supp. Figure 26
Notes
Accredited to all authors in the manuscript.
Files
liana_all_out.zip
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