Published May 3, 2022
| Version v1
Dataset
Open
Dataset for the manuscript: Modelling the within-host spread of SARS-CoV-2 infection, and the subsequent immune response, using a hybrid, multiscale, individual-based model. Part I: Macrophages.
Creators
- 1. University of Bath
- 2. University of St Andrews
- 3. University of Edinburgh
- 4. Royal Infirmary of Edinburgh
Description
Dataset for the manuscript:
Modelling the within-host spread of SARS-CoV-2 infection, and the subsequent immune response, using a hybrid, multiscale, individual-based model. Part I: Macrophages. preprint, bioRxiv, 2022. DOI: 10.1101/2022.05.06.490883
Each zip file contains the raw computational data (as a gzip compressed tarball), YAML input files, as well as Python plotting scripts. The Python plotting scripts have dependencies on the packages: tarfile, multiprocessing, numpy, scipy, and matplotlib. Note that the Python plotting scripts plot directly from the gzip compressed tarballs.
The corresponding code can be found on GitHub: https://github.com/Ruth-Bowness-Group/CAModel