The antique genetic plight of the Mediterranean monk seal (Monachus monachus)
Creators
-
Jordi Salmona1
- Julia Dayon2
-
Emilie Lecompte1
-
Alexandros A. Karamanlidis3
-
Alex Aguilar4
- Pablo Fernandez de Larrinoa5
-
Rosa Pires6
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Giulia Mo7
-
Aliki Panou8
- Sabrina Agnesi7
-
Asunción Borrell4
- Erdem Danyer9
- Bayram Öztürk10
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Arda M. Tonay10
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Tasos Anestis8
- Luis M. Gonzalez11
- Panagiotis Dendrinos3
-
Philippe Gaubert1
- 1. Laboratoire Évolution & Diversité Biologique, CNRS-UPS-IRD, Université Paul Sabatier, 118 route de Narbonne, 31062 Toulouse, France
- 2. Laboratoire Évolution & Diversité Biologique, CNRS-UPS-IRD, Université Paul Sabatier, 118 route de Narbonne, 31062 Toulouse, France; CEFE, Univ Montpellier, CNRS, EPHE-PSL University, IRD, Montpellier, France
- 3. MOm/Hellenic Society for the Study and Protection of the Monk seal, Solomou Str. 18, 10682 Athens, Greece
- 4. Universitat de Barcelona, IRBio and Department of Evolutionary Biology, Ecology and Environmental Sciences, Faculty of Biology, Diagonal 643, 08028 Barcelona, Spain
- 5. Monk Seal Conservation Program, Fundación CBD-Habitat, Gustavo Fernández Balbuena 2, 28002 Madrid, Spain
- 6. Instituto das Florestas e Conservação da Natureza IP-RAM, Jardim Botânico da Madeira, Caminho do Meio, Bom Sucesso, 9064-512, Funchal, Madeira, Portugal
- 7. Istituto Superiore per la Protezione e la Ricerca Ambientale (ISPRA), Via Vitaliano Brancati 48, 00144, Rome, Italy
- 8. Archipelagos - environment and development, Lourdata, 281 00 Kefalonia, Greece
- 9. Turkish Marine Research Foundation (TUDAV), PO Box 10, Beykoz, Istanbul, Turkey ; Veterinary Control Central Research Institute, Ankara, Turkey
- 10. Turkish Marine Research Foundation (TUDAV), PO Box 10, Beykoz, Istanbul, Turkey; Istanbul University, Faculty of Aquatic Sciences, Ordu Cad. No: 8 Laleli, Istanbul, Turkey
- 11. Subdirección General de Biodiversidad Terrestre y Marina, Ministerio para la Transición Ecológica y el Reto Demográfico, Pza. San Juan de la Cruz, 10. E-28071. Madrid, Spain
Description
This repository contains all the scripts and most of the intermediary files necessary to replicate the analyses of the preprint "The antique genetic plight of the Mediterranean monk seal (Monachus monachus)" available at:
https://biorxiv.org/cgi/content/short/2021.12.23.473149v2
This version of the data has been revised according to two reviewers' comments and suggestions during a submission process at Proceedings of the Royal Society B.
Within each of the different zipped folders a readme.txt file briefly explains how the analyses are organized.
We thank all the collectors and museums listed in Table S1 for providing access to genetic samples. We are grateful to P. Kyritsis [Archipelagos], for his logistic help, to Sophie Courjal and the staff of the “Plateau technique - Biologie moléculaire et microbiologie” at EDB for their assistance during lab work, I. Carvalho for early comments on the manuscript and two anonymous reviewers who significantly helped improving the manuscript. This work was funded by the Fondation Prince Albert II de Monaco (project “Génétique de la conservation du phoque moine de Méditerranée”). The Genotoul bioinformatics (Bioinfo Genotoul) platforms provided computing resources. JS was supported by PANGO-GO (ANR-17-CE02-0001), and LABEX TULIP (ANR-10-LABX-0041).
Notes
Files
ABC.zip
Files
(8.4 GB)
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Additional details
Funding
- TULIP – Towards a Unified theory of biotic Interactions: the roLe of environmental ANR-10-LABX-0041
- Agence Nationale de la Recherche