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Published October 1, 2019 | Version v1
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Application Of Dna Barcoding In Taxonomy And Phylogeny: An Individual Case Of Coi Partial Gene Sequencing From Seven Animal Species

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Drohvalenko, M., Mykhailenko, A., Rekrotchuk, M., Shpak, L., Shuba, V., Trokhymchuk, R., Utevsky, S., Zinenko, O. (2019): Application Of Dna Barcoding In Taxonomy And Phylogeny: An Individual Case Of Coi Partial Gene Sequencing From Seven Animal Species. Vestnik Zoologii 53 (5): 375-384, DOI: 10.2478/vzoo-2019-0034, URL: http://dx.doi.org/10.2478/vzoo-2019-0034

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urn:lsid:plazi.org:pub:FF8B042ACD40502B42604803FF96FFA6

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Publication: 10.2305/IUCN.UK.2010-2.RLTS.T1095A3229615.en (DOI)
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Dataset: http://table.plazi.org/id/DF649DCCCD42502942C64CC1FCBEFB71 (URL)
Dataset: http://table.plazi.org/id/DF649DCCCD43502842CF48ACFD66FF63 (URL)
Figure: 10.5281/zenodo.6449547 (DOI)
Figure: 10.5281/zenodo.6449549 (DOI)
Figure: 10.5281/zenodo.6449551 (DOI)

References

  • Aljanabi, S. M., Martinez, I. 1997. Universal and rapid salt-extraction of high quality genomic DNA for PCRbased techniques. Nucleic Acids Res, 25, 4692-4693.
  • Andres, C., Franke, F, Bleidorn, C, Bernhard, D, Schlegel, M. 2014. Phylogenetic analysis of the Lacerta agilis subspecies complex. Syst Biodivers, 12, 43-54.
  • Bogdanov, A. S., Bannikova, A. A., Pirusskii, Y. M., Formozov, N. A. 2009. The First Genetic Evidence of Hybridization between West European and Northern White-breasted Hedgehogs (Erinaceus europaeus and E. roumanicus) in Moscow Region. Biol Bull Russ Acad Sci, 36 (6), 647-651.
  • Cesari, M, Guidetti, R, Rebecchi, L, Giovannini, I, Bertolani, R. 2013. A DNA barcoding approach in the study of tardigrades. J Limnol, 72, 23.
  • Ciobanu, D. G., Grechko, V. V., Kramerov, D. A., Darevsky, I. S. 2003. A New Subfamily of the Satellite DNA, CLsatIV, of the Lizard Darevskia lindholmi (Sauria, Laceridae): Structure and Evolution. Dokl Biochem Biophys, 392 (1-6), 263-267.
  • De Carvalho, M. R., Bockmann, F. A., Amorim, D. S., Brandao, C. R. F., de Vivo, M., de Figueiredo, J. L., Britski, H. A., de Pinna, M. C. C., Menezes, N. A., Marques, F. P. L., Papavero, N., Cancello, E. M., Crisci, J. V., McEachran, J. D., Schelly, R. C., Lundberg, J. G., Gill, A. C., Britz, R., Wheeler, Q. D., Stiassny, M. L. J., Parenti, L. R., Page, L. M., Wheeler, W. C., Faivovich, J., Vari, R. P., Grande, L., Humphries, C. J., DeSalle, R., Ebach, M. C., Nelson, G. J. 2007. Taxonomic Impediment or Impediment to Taxonomy? A Commentary on Systematics and the Cybertaxonomic-Automation Paradigm. Evol Biol, 34, 140-143.
  • Folmer, O., Black, M., Hoeh, W., Lutz, R., Vrijenhoek, R. 1994. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol Mar Biol Biotech, 3 (5), 294-299.
  • Grechko, V. V., Ciobanu, D. G., Darevsky, I. S., Kosushkin, S. A., Kramerov, D. A. 2006. Molecular evolution of satellite DNA repeats and speciation of lizards of the genus Darevskia (Sauria: Lacertidae). Genome, 49 (10), 1297-1307.
  • Guil, N., Sanchez-Moreno, S., Machordom, A. 2009. Local biodiversity patterns in micrometazoans: Are tardigrades everywhere? Syst Biodivers, 7 (3), 259-268.
  • Guglya, Yu., Zinenko, O. 2008. New Data on Expansion of the Leaf-Mining Moth, Cameraria ochridella (Lepidoptera, Gracillariidae), in Ukraine. Vestnik Zooogiil, 42 (3), 220.
  • Hall, T. A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids. Symp. Ser., 41, 95-98.
  • He, K., Chen, J. H., Gould, G. C., Yamaguchi, N., Ai, H-S., Wang, Y-X., Zhang, Y-P., Jiang, X-L. 2012. An estimation of Erinaceidae phylogeny: a combined analysis approach. PLoS One 7: e39304.
  • Hebert, P. D. N., Cywinska, A., Ball, S. L., de Waard, J. R. 2003. Biological identifications through DNA barcodes. Proc Biol Sci, 270 (1512), 313-321.
  • Kaczmarek, L., Gawlak, M., Bartels, P. J., Nelson, D. R., Roszkowska, M. 2017. Revision of the Genus Paramacrobiotus Guidetti et al., 2009 with the Description of a New Species, Re-Descriptions and a Key. Ann Zool, 67, 627-656.
  • Kaczmarek, L., Michalczyk, L. 2017. The Macrobiotus hufelandi group (Tardigrada) revisited. Zootaxa, 4363 (1), 101-123.
  • Kalyabina, S. A., Milto, K. D., Ananjeva, N. B., Legal, L., Joger, U., Wink, M. 2001. Phylogeography and systematics of Lacerta agilis based on mitochondrial cytochrome b gene sequences: first results. Russ J Herpetol, 8, 149-158.
  • Kalyabina-Hauf, S. A., Ananjeva, N. B. 2004. Phylogeography and intraspecies structure of wide distributed sand lizard, Lacerta agilis L. 1758 (Lacertidae, Sauria, Reptilia). Trudy Zoologicheskogo Instituta, 302, 1-105.
  • Kapli, P., Poulakakis, N., Lymberakis, P., Mylonas, M. 2011. A re-analysis of the molecular phylogeny of Lacertidae with currently available data. Basic Appl Herpetol, 25, 97-104.
  • Kukushkin, O. V., Doronin, I. V., Tuniyev, B. S., Ananjeva, N. B., Doronina, M. A. 2017. Introduction of Amphibians and Reptiles at the Caucasus and the Crimea: an Overview and Some Actual Data. Curr Stud Herpetol, 17, 157-197.
  • Kumar, S., Stecher, G., Tamura, K. 2016. MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for bigger datasets. Mol Biol and Evol, 33 (7), 1870-1874.
  • Lee, J., Rho, H. S., Chang, C. Y. 2017. Taxonomic Study of Marine Tardigrades from Korea III. A New Species of the Genus Orzeliscus (Heterotardigrada, Halechiniscidae). Animal Syst Evol Divers, 33, 26-32.
  • Lees, D. C., Lack, H. W., Rougerie, R., Hernandez-Lopez, A., Raus, T., Avtzis, N., Augustin, S., Lopez- Vaamonde, C. 2011. Tracking origins of invasive herbivores through herbaria and archival DNA: the case of the horse-chestnut leaf miner. Front Ecol Environ, 9, 322-328.
  • MacCuloch, R. D., Fu, J., Darevsky, I. S., Murphy, R. W. 2000. Genetic evidence for species status of some Caucasian rock lizards in the Darevskia saxicola group. Amphibia-Reptilia, 21, 169-176.
  • Perez-Pech, W. A., Anguas-Escalante, A., Cutz-Pool, L. Q., Guidetti, R. 2017. Doryphoribius chetumalensis sp. nov. (Eutardigrada: Isohypsibiidae) a new tardigrade species discovered in an unusual habitat of urban areas of Mexico. Zootaxa, 4344 (2), 345-356.
  • Pilato, G., Binda, M. G. 2001. Biogeography and limno-terrestrial tardigrades: are they truly incompatible binomials? Zool Anz, 240, 511-516.
  • Ratnasingham, S., Hebert, P. D. N. 2007. BOLD: The Barcode of Life Data System (www.barcodinglife.org). Mol Ecol Notes, 7, 355-364.
  • Ratnasingham, S., Hebert, P. D. N. 2013. A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System. PLoS ONE 8, e66213
  • Tarkhnishvili, D., Gabelaia, M., Mumladze, L., Murtskhvaladze, M. 2016. Mitochondrial phylogeny of the Darevskia saxicola complex: two highly deviant evolutionary lineages from the easternmost part of the range. Herpetol J, 26, 175-182.
  • Valade, R., Kenis, M., Hernandez-Lopez, A, Augustin, S., Mari Mena, N., Magnoux, E., Rougerie, R., Lakatos, F., Roques, A., Lopez-Vaamonde, C. 2009. Mitochondrial and microsatellite DNA markers reveal a Balkan origin for the highly invasive horse-chestnut leaf miner Cameraria ohridella (Lepidoptera, Gracillariidae). Mol Ecol, 18, 3458-3470.
  • Voss, S. R., Woodcock, M. R., Zambrano, L. 2015. A tale of two axolotls. BioScience, 65, 1134-1140.
  • Zambrano, L., Valiente, E., Vander Zanden, M. J. 2010. Food web overlap among native axolotl (Ambystoma mexicanum) and two exotic fishes: carp (Cyprinus carpio) and tilapia (Oreochromis niloticus) in Xochimilco, Mexico City. Biol Invasions, 12, 3061-3069.
  • Zambrano, L., Reidl, P. M., McKay, J., Griffiths, R., Shaffer, B., Flores-Villela, O., ParraOlea, G., Wake, D. 2010. Ambystoma mexicanum. In: IUCN 2010. The IUCN Red List of Threatened Species. Version 2010. DOI: 10.2305/IUCN.UK.2010-2.RLTS.T1095A3229615.en.
  • Zerova, M. D., Nikitenko, G. N., Narolsky, N. B., Gershenson, Z. S., Sviridov, S. V., Lukash, O. V., Babidoritsh, M. M. 2007. Horse-chestnut Leaf miner, Cameraria ohridella, in Ukraine. Kiev, Ukraine, Schmalhausen Institute of Zoology [In Russian].
  • Zinenko, O. I., Drabkin, P. L., Rudyk, O. M. 2005. Contact zone between two subspecies of the Sand lizard: Lacerta agilis exigua Eichw., 1831 and Lacerta agilis chersonensis Andr., 1832 in three regions of the Leftbank Ukraine. In: Ananjeva, N., Tsinenko, O., eds. Herpetologica Petropolitana. Proceedings of the 12th Ordinary General Meeting Societas Europea Herpetologica, August 12-16, 2003, St. Petersburg, Russian Federation: SEH, 109-112.