Published July 3, 2020 | Version v1
Journal article Open

From Raw Data to FAIR Data: The FAIRification Workflow for Health Research

  • 1. SRDC Software Research Development and Consultancy Corporation, Ankara, Turkey
  • 2. Group of Research and Innovation in Biomedical Informatics, Biomedical Engineering and Health Economy, Institute of Biomedicine of Seville/Virgen del Rocío University Hospital/CSIC/ University of Seville, Seville, Spain
  • 3. Peter L. Reichertz Institute for Medical Informatics of TU Braunschweig and Hannover Medical School, Braunschweig, Germany
  • 4. Health Level Seven International Foundation, Brussels, Belgium
  • 5. Atos, Group of Health, Atos Research and Innovation (ARI), Madrid, Spain
  • 6. Department of Library and Information Sciences, Universidad Carlos III de Madrid, Madrid, Spain

Description

Background FAIR (findability, accessibility, interoperability, and reusability) guiding principles seek the reuse of data and other digital research input, output, and objects (algorithms, tools, and workflows that led to that data) making them findable, accessible, interoperable, and reusable. GO FAIR - a bottom-up, stakeholder driven and self-governed initiative - defineda seven-step FAIRification process focusingondata, but also indicating the required work formetadata. This FAIRification process aims at addressing the translation of raw datasets into FAIR datasets in a general way, without considering specific requirements and challenges that may arise when dealing with some particular types of data.
Objectives This scientific contribution addresses the architecture design of an open technological solution built upon the FAIRification process proposed by “GO FAIR” which addresses the identified gaps that such process has when dealing with health datasets.
Methods A common FAIRification workflow was developed by applying restrictions on existing steps and introducing new steps for specific requirements of health data. These requirements have been elicited after analyzing the FAIRification workflow from
different perspectives: technical barriers, ethical implications, and legal framework. This analysis identified gaps when applying the FAIRification process proposed by GO FAIR to health research data management in terms of data curation, validation, deidentification, versioning, and indexing.
Results A technological architecture based on the use of Health Level Seven International (HL7) FHIR (fast health care interoperability resources) resources is proposed to support the revised FAIRification workflow.

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