Published April 6, 2022 | Version Finale version at the publisher
Journal article Open

EPR Characterization of the Heme Domain of a Self-Sufficient Cytochrome P450 (CYP116B5)

  • 1. aDepartment of Condensed Matter Physics, Faculty of Sciences, University of Zaragoza, Calle Pedro Cerbuna 12, 50009, Zaragoza, Spain
  • 2. cDepartment of Life Sciences and Systems Biology, University of Turin, Via Accademia Albertina, 13, 10123, Turin, Italy
  • 3. bDepartment of Chemistry, University of Turin, Via Giuria 9, 10125, Torino, Italy

Description

CYP116B5 is a self-sufficient cytochrome P450 (CYP450) with interesting catalytic properties for synthetic
purposes. When isolated, its heme domain can act as a peroxygenase on different substrates of biotechnological
interest. Here, by means of continuous wave and advanced EPR techniques, the coordination environment of iron
in the isolated CYP116B5 heme domain (CYP116b5hd) is characterized. The ligand-free protein shows the
characteristic EPR spectrum of a low-spin (S = 1/2) FeIII-heme with [gz = 2.440 ± 0.005, gy = 2.25 ± 0.01, gx =
1.92 ± 0.01]. These g-values reflect an electronic ground state very similar to classical P450 monooxygenases
rather than P450 peroxygenases. Binding of imidazole results in g-values very close to the ones reported for
CYP152 peroxygenases. The detection of hyperfine interactions through HYperfine Sub-level CORrElation
(HYSCORE) Spectroscopy experiments, shows that this is due to a nitrogen-mediated axial coordination. This
work adds a piece of experimental evidence to the research, aimed at elucidating the features that distinguish the
classical P450 enzymes from peroxygenases. It shows that the electronic environment of heme iron of CYP116B5
in the resting state is similar to the classical P450 monooxygenases. Therefore, it is not the critical factor that
confers to CYP116B5hd its peroxygenase-like activity, suggesting a crucial role of the protein matrix.

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Additional details

Related works

Is supplemented by
10.5281/zenodo.6418626 (DOI)

Funding

PARACAT – Paramagnetic Species in Catalysis Research. A Unified Approach Towards Heterogeneous, Homogeneous and Enzyme Catalysis 813209
European Commission