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Published March 23, 2022 | Version 1.4.1
Software Open

Bactopia: a Flexible Pipeline for Complete Analysis of Bacterial Genomes. mSystems. 5 (2020)

Creators

Description

v2.0.3 bactopia/bactopia "King Cobra" - 2022/03/23 Added
  • logo and new metro style workflow
  • added test profile for easy testing
  • mashdist now outputs a merged TSV
  • print missing required parameters in Bactopia Tools
  • bump bakta to v1.4.0
Fixed
  • typo in bakta subworkflow
  • ismapper not available in bactopia-tools.nf
  • kraken2 not available in bactopia-tools.nf
  • Traits file being required for pangenome
  • mashtree module not collecting all FASTA
  • tests for ISMapper

Full Changelog: https://github.com/bactopia/bactopia/compare/v2.0.2...v2.0.3

Notes

If you use Bactopia, please cite it as below.

Files

bactopia/bactopia-v2.0.3.zip

Files (3.1 MB)

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md5:3b47aad65e4278d884e185748e4d35bd
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Additional details

Related works

Is supplement to
https://github.com/bactopia/bactopia/tree/v2.0.3 (URL)