Published March 17, 2022
| Version v1
Journal article
Restricted
The case of the missing mushroom: a novel bioluminescent species discovered within Favolaschia in southwestern China
Creators
- 1. CAS Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Menglun, Mengla, Yunnan, China. & University of Chinese Academy of Sciences, Beijing, China. & tnimalrathna@gmail.com; https://orcid.org/0000-0002-2368-042X
- 2. Center for Mountain Futures (CMF), Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China. & Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China & saowaluckfai@gmail.com; https://orcid.org/0000-0002-4706-6547
- 3. CAS Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Menglun, Mengla, Yunnan, China. & a.nakamura@xtbg.ac.cn; https://orcid.org/0000-0001-7349-5102
- 4. Postgraduate Institute of Science (PGIS), University of Peradeniya, Peradeniya, Sri Lanka. & mcagalappaththi@gmail.com; https://orcid.org/0000-0002-8375-7601
- 5. Center for Mountain Futures (CMF), Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China. & jxu@mail.kib.ac.cn; https://orcid.org/0000-0002-2485-2254
- 6. Center for Mountain Futures (CMF), Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China. & peter@mail.kib.ac.cn; https://orcid.org/0000-0003-3188-9327
- 7. Center for Mountain Futures (CMF), Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China. & Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China & samanthakarunarathna@gmail.com; https://orcid.org/0000-0001-7080-0781
Description
Nimalrathna, Thilina S., Tibpromma, Saowaluck, Nakamura, Akihiro, Galappaththi, Mahesh C.A., Xu, Jianchu, Mortimer, Peter E., Karunarathna, Samantha C. (2022): The case of the missing mushroom: a novel bioluminescent species discovered within Favolaschia in southwestern China. Phytotaxa 539 (3): 244-256, DOI: 10.11646/phytotaxa.539.3.3, URL: http://dx.doi.org/10.11646/phytotaxa.539.3.3
Files
Linked records
Additional details
Identifiers
- LSID
- urn:lsid:plazi.org:pub:9075AF07FFEA5028FA58FFDA9F1B2953
- URL
- http://publication.plazi.org/id/9075AF07FFEA5028FA58FFDA9F1B2953
References
- Audrey, L.C.C., Desjardin, D.E., Tan, Y., Musa, M.Y. & Sabaratnam, V. (2015) Bioluminescent fungi from Peninsular Malaysia-a taxonomic and phylogenetic overview. Fungal Diversity 70 (1): 149-187. https://doi.org/10.1007/s13225-014-0302-9
- Bodensteiner, P., Binder, M., Moncalvo, J.M., Agerer, R. & Hibbett, D.S. (2004) Phylogenetic relationships of cyphelloid homobasidiomycetes. Molecular Phylogenetics and Evolution 33: 501-515. https://doi.org/10.1016/j.ympev.2004.06.007
- Cook, R., Inman, A. & Billings, C. (1997) Identification and classification of powdery mildew anamorphs using light and scanning electron microscopy and host range data. Mycological Research 101: 975-573. https://doi.org/10.1017/S095375629700364X
- Corner, E.J.H. (1954) Further descriptions of luminous agarics. Transactions of the British Mycological Society 37 (3): 256. https://doi.org/10.1016/S0007-1536(54)80009-X
- Cortes-Perez, A., Desjardin, D.E., Perry, B.A., Ramirez-Cruz, V., Ramirez-Guillen, F., Villalobos-Arambula, A.R. & Rockefeller, A. (2019) New species and records of bioluminescent Mycena from Mexico. Mycologia 111 (2): 319-338. https://doi.org/10.1080/00275514.2018.1554172
- Dai, Y.C., Yang, Z.L., Cui, B.K., Yu, C.J. & Zhou, L.W. (2009) Species diversity and utilization of medicinal mushrooms and fungi in china (Review). International Journal of Medicinal Mushrooms 11 (3): 287-302. https://doi.org/10.1615/IntJMedMushr.v11.i3.80
- Dauner, L.A.P., Karunarathna, S.C., Tibpromma, S., Xu, J. & Mortimer, P.E. (2021) Bioluminescent fungus Roridomyces viridiluminus sp. nov. and the first Chinese record of the genus Roridomyces, from Southwestern China. Phytotaxa 487 (3): 233-250. https://doi.org/10.11646/phytotaxa.487.3.4
- Gillen, K., Laessoe, T., Kirschner, R. & Piepenbring, M. (2012) Favolaschia species (Agaricales, Basidiomycota) from Ecuador and Panama. Nova Hedwigia 96 (1-2): 117-165. https://doi.org/10.1127/0029-5035/2012/0070
- Haddock, S.H., Moline, M.A. & Case, J.F. (2010) Bioluminescence in the sea. Annual review of marine science 2: 443-493. https://doi.org/10.1146/annurev-marine-120308-081028
- Hall, T.A. (1999) BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95-98.
- Huelsenbeck, J.P. & Ronquist, F. (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17 (8): 754-755. https://doi.org/10.1093/bioinformatics/17.8.754
- Johnston, P.R., Whitton, S.R., Buchanan, P.K., Park, D., Pennycook, S.R., Johnson, J.E. & Moncalvo, J.M. (2006) The basidiomycete genus Favolaschia in New Zealand. New Zealand Journal of Botany 44 (1): 65-87. https://doi.org/10.1080/0028825X.2006.9513007
- Karunarathna, S.C., Mortimer, P.E., Tibpromma, S., Dutta, A.K., Paloi, S., Hu, Y., Baurah, G., Axford, S., Marciniak, C., Luangharn, T., Madawala, S., Lin, C., Chen, J.Z., Acharya, K., Kobmoo, N., Samarakoon, M.C., Karunarathna, A., Gao, S., Xu, J. & Lumyong, S. (2020) Roridomyces phyllostachydis (Agaricales, Mycenaceae), a new bioluminescent fungus from Northeast India. Phytotaxa 459 (2): 155-167. https://doi.org/10.11646/phytotaxa.459.2.6
- Katoh, K. & Standley, D.M. (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular biology and evolution 30 (4): 772-780. https://doi.org/10.1093/molbev/mst010
- Kotlobay, A.A., Sarkisyan, K.S., Mokrushina, Y.A., Marcet-Houben, M., Serebrovskaya, E.O., Markina, N.M., Somermeyer, L.G., Gorokhovatsky, A.Y., Vvedensky, A., Purtov, K.V. & Petushkov, V.N. (2018) Genetically encodable bioluminescent system from fungi. Proceedings of the National Academy of Sciences 115 (50): 12728-12732. https://doi.org/10.1073/pnas.1803615115
- Kreisel, H. & Schauer, F. (1987) Methoden des mykologischen Laboratoriums, pp. 103-104. Gustav Fischer Verlag, Stuttgart, Germany
- Krishnendu, A., Prakash, P., Sherpa, N.L. & Dutta, A.K. (2014) Favolaschia -a new fungal genus record for Eastern India. Indian Forester 140 (6): 639-640.
- Largent, D.L., Johnson, D. & Watling, R. (1977) How to identify mushrooms to genus III: microscopic features. Eureka: Mad River Press.
- Li, Y.D., Kundrata, R., Tihelka, E., Liu, Z., Huang, D. & Cai, C. (2021) Cretophengodidae, a new Cretaceous beetle family, sheds light on the evolution of bioluminescence. Proceedings of the Royal Society B: Biological Sciences 288 (1943): 20202730. https://doi.org/10.1098/rspb.2020.2730
- Magnago, A. (2013) Contributions towards the knowledge of Favolaschia (Mycenaceae, Agaricomycetes) from Brazil. Mycosphere 4 (6): 1071-1078. https://doi.org/10.5943/mycosphere/4/6/5
- Mensinger, A.F. (2011) THE SKIN | Bioluminescence in Fishes. Encyclopedia of Fish Physiology. Elsevier, USA, pp. 497-503. https://doi.org/10.1016/B978-0-12-374553-8.00160-X
- Miettinen, O. & Larsson, K.H. (2006) Trechispora elongata species nova from North Europe. Mycotaxon 96: 193-198.
- Miller, M.A., Pfeiffer, W. & Schwartz, T. (2011) The CIPRES science gateway: a community resource for phylogenetic analyses. In: Proceedings of the 2011 TeraGrid Conference: extreme digital discovery. pp. 1-8. https://doi.org/10.1145/2016741.2016785
- Mishra, M. & Srivastava, D. (2021) Bioluminescent fungi: reviewing nature's riddle!. Journal of Mycopathology Research 59 (3): 199- 206.
- Moline, M.A., Oliver, M.J., Orrico, C., Zaneveld, R. & Shulman, I. (2013) Bioluminescence in the sea. In: Subsea Optics and Imaging. Elsevier, pp. 134-170. https://doi.org/10.1533/9780857093523.2.134
- Nylander, J.A.A. (2004) MrModeltest v2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University
- Oliveira, A.G., Desjardin, D.E., Perry, B.A. & Stevani, C.V. (2012) Evidence that a single bioluminescent system is shared by all known bioluminescent fungal lineages. Photochemical & Photobiological Sciences 11 (5): 848-852. https://doi.org/10.1039/c2pp25032b
- Oliveira, A.G., Stevani, C.V., Waldenmaier, H.E., Viviani, V., Emerson, J.M., Loros, J.J. & Dunlap, J.C. (2015) Circadian control sheds light on fungal bioluminescence. Current Biology 25 (7): 964-968. https://doi.org/10.1016/j.cub.2015.02.021
- Patouillard, N.T & Lagerheim de, N.G. (1892) Champignons de l'eiquateur. Pugillus II. Bulletin de la Societe mycologique de France 8: 113-140.
- Ridgway, R. (1912) Color Standards and Color Nomenclature. 2nd ed. Washington DC: published by Author. https://doi.org/10.5962/bhl.title.144788
- Shimomura, O. (2006) Bioluminescence: chemical principles and methods. World Scientific Publishing Company, USA, 500 pp. https://doi.org/10.1142/6102
- Silvestro, D. & Michalak, I. (2012) raxmlGUI: a graphical front-end for RAxML. Organisms Diversity & Evolution 12 (4): 335-337. https://doi.org/10.1007/s13127-011-0056-0
- Singer, R. (1974) A monograph of Favolaschia. Beihefte Nova Hedwigia 50: 1-108.
- Species Fungorum (2022) Favolaschia. Available from: http://www.speciesfungorum.org/Names/Names.asp (accessed 5 January 2022)
- Stamatakis, A. (2014) RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30 (9): 1312-1313. https://doi.org/10.1093/bioinformatics/btu033
- Tanet,L., Tamburini, C., Baumas, C., Garel, M., Simon, G. & Casalot, L.(2019) Bacterial bioluminescence:light emission in photobacterium phosphoreum is not under quorum-sensing control. Frontiers in Microbiology 10: 1-9. https://doi.org/10.3389/fmicb.2019.00365
- Teng, S.C. (1963) Zhong Guo De Zhen Jun [Fungi of China]. 808 pp.
- Vellinga, E.C. (1988) Glossary. In: Bas, C., Kuyper, T.W., Noordeloos, M.E. & Vellinga, E.C. (eds.) Flora Agaricina Neerlandica 1. Rotterdam: AA Balkema. pp. 54-64.
- Vilgalys, R. & Hester, M. (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of bacteriology 172 (8): 4238-4246. https://doi.org/10.1128/jb.172.8.4238-4246.1990
- White, T.J., Bruns, T., Lee, S.J.W.T. & Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR protocols: a guide to methods and applications 18 (1): 315-322. https://doi.org/10.1016/B978-0-12-372180-8.50042-1
- Wu, F., Zhou, L.W., Yang, Z.L., Bau, T., Li, T.H. & Dai, Y.C. (2019) Resource diversity of Chinese macrofungi: edible, medicinal and poisonous species. Fungal Diversity 98 (1): 1-76. https://doi.org/10.1007/s13225-019-00432-7
- Zhang, Q.Y. & Dai, Y.C. (2021) Taxonomy and phylogeny of the Favolaschia calocera complex (Mycenaceae) with descriptions of four new species. Forests 12: 1397. https://doi.org/10.3390/f12101397