Published March 7, 2022 | Version v1
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Fine-scale diversity in Rhodocybe mellea (Entolomataceae, Basidiomycota), with a description of a new variety and notes on sclerotia formation in Rhodocybe

  • 1. Programa de Pós-Graduação em Sistemática e Evolução, Universidade Federal do Rio Grande do Norte, Natal, Rio Grande do Norte, Brazil. & mdorcinoxavier@gmail.com; https://orcid.org/0000-0002-2059-4008
  • 2. Programa de Pós-Graduação em Sistemática e Evolução, Universidade Federal do Rio Grande do Norte, Natal, Rio Grande do Norte, Brazil. & silvafilhoags@gmail.com; https://orcid.org/0000-0003-3356-6847
  • 3. Departamento de Sistemática e Ecologia, Universidade Federal da Paraíba, João Pessoa, Paraíba, Brazil. & fwartchow@yahoo.com.br; https://orcid.org/0000-0003-4930-565X
  • 4. Departamento de Botânica e Zoologia, Universidade Federal do Rio Grande do Norte, Natal, Rio Grande do Norte, Brazil. & iuribaseia@gmail.com; https://orcid.org/0000-0002-7242-0587

Description

Xavier, Miguel D., Silva-Filho, Alexandre G. S., Wartchow, Felipe, Baseia, Iuri G. (2022): Fine-scale diversity in Rhodocybe mellea (Entolomataceae, Basidiomycota), with a description of a new variety and notes on sclerotia formation in Rhodocybe. Phytotaxa 538 (2): 87-99, DOI: 10.11646/phytotaxa.538.2.1

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urn:lsid:plazi.org:pub:FF88322E265BFF82FF91ED6DFFC50419
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References

  • Baroni, T.J. & Halling, R.E. (1992) New species of Rhodocybe from South America with a key to species. Mycologia 84 (3): 411-421. https://doi.org/10.1080/00275514.1992.12026155
  • Baroni, T.J. & Petersen, R.H. (1987) Rhodocybe lla: a new genus in the Entolomataceae. Mycologia 79 (3): 358-361.
  • Baroni, T.J. (1981) A revision of the genus Rhodocybe Maire (Agaricales). Nova Hedwigia Beihefte, Germany, 194 pp.
  • Baroni, T.J., Angelini, C., Bergemann, S.E., Lodge, D.J., Lacey, L., Curtis, T.A. & Cantrell, S.A. (2020) Rhodocybe -Clitopilus clade (Entolomataceae, Basidiomycota) in the Dominican Republic: new taxa and first reports of Clitocella, Clitopilus, and Rhodocybe for Hispaniola. Mycological Progress 19 (10): 1083-1099. https://doi.org/10.1007/s11557-020-01619-y
  • Bulliard, J.B.F (1792) Herbier de la France, ou Collection complette des plantes indigenes de ce royaume: avec leurs details anatomiques, leurs proprietes, et leurs usages en medecine. Library of the New York Botanical Garden 12: 529-576.
  • Coimbra, V.R.M. (2014) Checklist of Central and South American Agaricales (Basidiomycota) I: Entolomataceae. Mycosphere 5 (3): 475-487. https://doi.org/10.5943/mycosphere/5/3/10
  • Costantin, J. & Dufour, L. (1947) Nouvelle flore des champignons pour la determination facile de toutes les especes europeenes: avec 4702 figures et une planche de 42 couleurs. Librairie Generale de l'Enseignement, Paris, 319 pp.
  • de Meijer, A.A.R. (2006) Preliminary list of the Macromycetes from the Brazilian state of Parana. Boletim do Museu Botanico Municipal 68: 1-55.
  • de Meijer, A.A.R. (2008) Macrofungos notaveis das Florestas de Pinheiro-do-Parana. Embrapa Florestas, Colombo, 418 pp.
  • Del-Prado, R., Cubas, P., Lumbsch, H.T., Divakar, P.K., Blanco, O., de Paz, G.A., Molina, M.C. & Crespo, A. (2010) Genetic distances within and among species in monophyletic lineages of Parmeliaceae (Ascomycota) as a tool for taxon delimitation. Molecular Phylogenetics and Evolution 56 (1): 125-133. https://doi.org/10.1016/j.ympev.2010.04.014
  • Dennis, R.W.G. (1953) Les Agaricales de l'Ile de la Trinite: Rhodosporae-Ochrosporae. Bulletin de la Societe Mycologique de France 69 (2): 145-198.
  • Dennis, R.W.G. (1961) Fungi venezuelani: IV, Agaricales. Kew Bulletin 15 (1): 67-156.
  • Donk, M.A. (1962) The generic names proposed for the Agaricaceae. Beihefte zur Nova Hedwigia 5: 1-320.
  • Empresa Brasileira de Pesquisa Agropecuaria (1994) Plano diretor do Centro de Pesquisa Agropecuaria dos Tabuleiros Costeiros (CPATC). EMBRAPA-SPI, Brasilia, 37 pp.
  • Fries, E.M. (1818) Observationes mycologicae praecipue ad illustrandam Floram Suecicam (Vol. 2). Sumptibus G. Bonnieri, Copenhagen, Denmark, 372 pp.
  • Fries, E.M. (1838) Epicrisis systematis mycologici seu synopsis Hymenomycetum. Typographia Academica, Uppsala, Sweden, 610 pp.
  • Gouy, M., Guindon, S. & Gascuel, O. (2010) SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Molecular biology and evolution 27 (2): 221-224. https://doi.org/10.1093/molbev/msp259
  • Hamming, R.W. (1950) Error detecting and error correcting codes. Bell System Technical Journal 29: 147-160.
  • Horak, E. (1963) Fungi austroamericani III Rhodogaster gen. nov. a new link from Chile towards the Rhodophyllaceae. Sydowia 17: 190-192.
  • Instituto Brasileiro do Meio Ambiente e dos Recursos Naturais Renovaveis (2003) Plano de Manejo da Reserva Biologica Guaribas. MMA/IBAMA, Brasilia, 520 pp.
  • Jombart, T. (2008) adegenet: a R package for the multivariate analysis of genetic markers. Bioinformatics 24 (11): 1403-1405. https://doi.org/10.1093/bioinformatics/btn129
  • Katoh, K. & Standley, D.M. (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular biology and evolution 30 (4): 772-780. https://doi.org/10.1093/molbev/mst010
  • Koljalg, U., Nilsson, R.H., Abarenkov, K., Tedersoo, L., Taylor, A.F.S., Bahram, M., Bates, S.T., Bruns, T.D., Bengtsson-Palme, J., Callaghan, T.M., Douglas, B., Drenkhan, T., Eberhardt, U., Duenas, M., Grebenc, T., Griffith, G.W., Hartmann, M., Kirk, P.M., Kohout, P., Larsson, E., Lindahl, B.D., Lucking, R., Martin, M.P., Matheny, P.B., Nguyen, N.H., Niskanen, T., Oja, J., Peay, K.G., Peintner, U., Peterson, M., Poldmaa, K., Saag, L., Saar, I., Schussler, A., Scott, J.A., Senes, C., Smith, M.E., Suija, A., Taylor, D.L., Telleria, M.T., Weiss, M. & Larsson, K.-H. (2013) Towards a unified paradigm for sequence-based identification of Fungi. Molecular Ecology 22 (21): 5271-5277. http://dx.doi.org/10.1111/mec.12481
  • Korshunova, T., Picton, B., Furfaro, G., Mariottini, P., Pontes, M., Prkic, J., Fletcher, K., Malmberg, K., Lundin, K. & Martynov, A. (2019) Multilevel fine-scale diversity challenges the 'cryptic species' concept. Scientific Reports 9 (1): 1-23. https://doi.org/10.1038/s41598-019-42297-5
  • Kummer, P. (1871) Der Fuhrer in die Pilzkunde. Verlag von E. Luppe's Buchhandlung, Zerbst, 146 pp.
  • Largent, D.L. (1986) How to identify mushrooms to genus I: Macroscopic features. Mad River Press, Eureka, California, 166 pp.
  • Largent, D.L., Johnson, D. & Watling, R. (1977) How to identify mushrooms to genus III: Microscopic features. Mad River Press, Eureka, California, 148 pp.
  • Lima, R.A.F., Oliveira, A.A., Pitta, G.R., de Gasper, A.L., Vibrans, A.C., Chave, J., ter Steege, H. & Prado, P.I. (2020) The erosion of biodiversity and biomass in the Atlantic Forest biodiversity hotspot. Nature communications 11 (1): 1-16. https://doi.org/10.1038/s41467-020-20217-w
  • Lundell, S. & Nannfeldt, J.A. (1942) Fungi Exsiccati Suecici, Fasc. XXXIII-XXXIV. The Herbarium-University of Uppsala, Sweden, 99 pp.
  • Maire, R. (1926) Etudes mycologiques (fascicule 2). Bulletin de la Societe Mycologique de France 40 (3): 293-317.
  • Matheny, P.B., Curtis, J.M., Hofstetter, V., Aime, M.C., Moncalvo, J.-M., Ge, Z.-W., Yang, Z.-L., Slot, J.C., Ammirati, J.F., Baroni, T.J., Bougher, N.L., Hughes, K.W., Lodge, D.J., Kerrigan, R.W., Seidl, M.T., Aanen, D.K., DeNitis, M., Daniele, G.M., Desjardin, D.E., Kropp, B.R., Norvell, L.L., Parker, A., Vellinga, E.C., Vilgalys, R. & Hibbett, D.S. (2006) Major clades of Agaricales: a multilocus phylogenetic overview. Mycologia 98 (6): 982-995. https://doi.org/10.3852/mycologia.98.6.982
  • Miller, M.A., Pfeiffer, W. & Schwartz, T. (2011) The CIPRES science gateway: a community resource for phylogenetic analyses. Proceedings of the 2011 TeraGrid Conference: extreme digital discovery 1-8. https://doi.org/10.1145/2016741.2016785
  • Moncalvo, J.M., Lutzoni, F.M., Rehner, S.A., Johnson, J. & Vilgalys, R. (2000) Phylogenetic relationships of agaric fungi based on nuclear large subunit ribosomal DNA sequences. Systematic biology 49 (2): 278-305. https://doi.org/10.1093/sysbio/49.2.278
  • Noordeloos, M.E. (1980) Entoloma subgenus Nolanea in the Netherlands and adjacent regions with a reconnaissance of its remaining taxa in Europe. Persoonia 10 (4): 427-534.
  • Online Auction Color (2004) The Online Auction Color Chart: the new language of color for buyers and sellers. The Online Auction Color Chart Company, Palo Alto, 12 pp.
  • Ordynets, A., Liebisch, R., Lysenko, L., Scherf, D., Volobuev, S., Saitta, A., Larsson, K.-H., Yurchenko, E., Buyck, B., Bolshakov, S. & Langer, E. (2020) Morphologically similar but not closely related: the long-spored species of Subulicystidium (Trechisporales, Basidiomycota). Mycological Progress 19 (7): 691-703. https://doi.org/10.1007/s11557-020-01587-3
  • Ovrebo, C.L. & Baroni, T.J. (1988) Three new species of Rhodocybe from Costa Rica. Mycologia 80 (4): 508-514. https://doi.org/10.1080/00275514.1988.12025572
  • Pegler, D.N. (1997) The agarics of Sao Paulo: an account of the agaricoid fungi (Holobasidiomycetes) of Sao Paulo State, Brazil. Royal Botanic Gardens Kew, Richmond, 68 pp.
  • Raithelhuber, J. (1990) The genus Clitocybe sensu lato in the countries of Argetina, Brazil and Chile. Metrodiana 18: 1-72.
  • Raithelhuber, J.H. (2004) Nueva Flora Micologica Argentina. J.H. Reithelhuber, Stuttgart, Germany, 545 pp.
  • Ronquist, F. & Huelsenbeck, J.P. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (12): 1572-1574. https://doi.org/10.1093/bioinformatics/btg180
  • Sesli, E. & Vizzini, A. (2017) Two new Rhodocybe species (sect. Rufobrunnea, Entolomataceae) from the East Black Sea coast of Turkey. Turkish Journal of Botany 41 (2): 200-210.
  • Shi, L., Dossa, G.G., Paudel, E., Zang, H., Xu, J. & Harrison, R.D. (2019) Changes in fungal communities across a forest disturbance gradient. Applied and environmental microbiology 85 (12): e00080-19. https://doi.org/10.1128/AEM.00080-19
  • Shishikura, M., Takemura, Y., Sotome, K., Maekawa, N., Nakagiri, A. & Endo, N. (2021) Four mycelial strains of Entoloma clypeatum species complex form ectomycorrhiza-like roots with Pyrus betulifolia seedlings in vitro, and one develops fruiting bodies 2 months after inoculation. Mycorrhiza 31 (1): 31-42. https://doi.org/10.1007/s00572-020-00994-4
  • Silva-Filho,A.G.S., Baroni, T.J., Komura, D.L., Moncalvo, J.M., Baseia, I.G. & Wartchow, F. (2020) Rhodocybe fusipes (Entolomataceae), a new species from Amazonian 'terra-firme'forest of Brazil. Sydowia 72: 163-170. https://doi.org/10.12905/0380.sydowia72-2020-0163
  • Silva-Filho, A.G.S., Teixeira-Silva, M.A. & Cortez, V.G. (2018) New species, new combination, and notes on Clitocella and Rhodocybe (Entolomataceae) from Parana state, Brazil. Darwiniana 6 (1): 58-67. https://doi.org/10.14522/darwiniana.2018.61.775
  • Singer, R. (1951) The Agaricales in modern taxonomy. Koeltz Scientific Books, Koenigstein, 832 pp.
  • Singer, R. (1962) Diagnoses fungorum novorum agaricalium II. Beihefte zur Sydowia 15: 45-83.
  • Singer, R. (1973) Diagnoses fungorum novorum agaricalium III. Beihefte zur Sydowia 7: 1-106.
  • Singer, R. (1986) The Agaricales in modern taxonomy, 4th ed. Koeltz Scientific Books, Koenigstein, 981 pp.
  • Singer, R. (1989) New taxa and new combinations of Agaricales (Diagnoses fungorum novorum agaricalium IV). Fieldiana Botany 21: 1-133.
  • Smith, M.E., Henkel, T.W. & Rollins, J.A. (2015) How many fungi make sclerotia? Fungal Ecology 13: 211-220. https://doi.org/10.1016/j.funeco.2014.08.010
  • Stamatakis, A. (2006) RaxML Version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30 (9): 1312-1313. https://doi.org/10.1093/bioinformatics/btu033
  • Struck, T.H., Feder, J.L., Bendiksby, M., Birkeland, S., Cerca, J., Gusarov, V.I., Kistenich, S., Larsson, K.-H.H., Liow, L.H., Nowak, M.D., Stedje, B., Bachmann, L. & Dimitrov, D. (2018) Finding evolutionary processes hidden in cryptic species. Trends in Ecology & Evolution 33 (3): 153-163. https://doi.org/10.1016/j.tree.2017.11.007
  • Sulzbacher, M.A., Grebenc, T., Giachini, A.J. & Baseia, I.G. (2017) Sclerotium-forming fungi from soils of the Atlantic rainforest of Northeastern Brazil. Plant Ecology and Evolution 150 (3): 358-362. https://doi.org/10.5091/plecevo.2017.1148
  • Swartz, O.L.O.F. (1788) Nova genera et species plantarum seu prodromus descriptionum vegetabilium maximam partem incognitorum. Bibliopoliis Acad. M. Swederi, Holmiae, Upsaliae & Aboae, 176 pp.
  • Thiers, B. (2021) Index Herbariorum: A global directory of public herbaria and associated staff, New York Botanical Garden's Virtual Herbarium. Available from: http://sweetgum.nybg.org/science/ih/ (accessed 13 August 2021).
  • Watkinson, S.C., Boddy, L. & Money, N. (2015) The fungi. Academic Press, 466 pp.
  • White, T.J., Bruns, T., Lee, S. & Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis, M.A., Gelfand, D.H., Sninsky, J.J. & White, T.J. (Eds.) PCR protocols: a guide to methods and applications. Academic Press, San Diego, pp. 315-322. https://doi.org/10.1016/B978-0-12-372180-8.50042-1