Published March 4, 2022
| Version Version1
Dataset
Open
TCGA_PanCancerRNAseq
Description
This dataset includes the harmonised version of all The Cancer Genome Atlas (TCGA) RNA-Seq data (33 cancer types, ~ 11000 samples). Each file is a "SummarizedExperiment" object that contains:1) three assays (raw gene-level counts, FPKM and FPKM.UQ), 2) sample and batch information from different resources, 3) several details for individual genes. The data can also be explored by an Rshiny app published in our pre-print paper doi: https://doi.org/10.1101/2021.11.01.466731.
Files
Files
(4.9 GB)
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173.4 MB | Download |
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247.7 MB | Download |
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39.9 MB | Download |
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177.6 MB | Download |
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114.2 MB | Download |
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203.0 MB | Download |
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md5:d349f91c6ff62a5d97820be05f760eb6
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196.7 MB | Download |
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md5:a6294b00d9c1f927a9af99000ba501e3
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72.6 MB | Download |
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md5:7022401e146dc45cfa8e41f26b1c1ceb
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248.6 MB | Download |
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md5:3b6cd90338e0b3618860c92bd154646c
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55.5 MB | Download |
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md5:df0c5d23a539bc9f0538495b840518ea
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249.6 MB | Download |
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md5:867e887828f90451d96a1d296e787809
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27.8 MB | Download |
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md5:f14976d9dfa7bc40aede952bae3cd3f5
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34.6 MB | Download |
Additional details
References
- RMolania, et.al. Removing unwanted variation from large-scale cancer RNA-sequencing data. doi: https://doi.org/10.1101/2021.11.01.466731