Published April 1, 2017
| Version v1
Journal article
Restricted
Arachidicoccus ginsenosidivorans sp. nov., with ginsenosideconverting activity isolated from ginseng cultivating soil
Description
Siddiqi, Muhammad Zubair, Aslam, Zubair, Im, Wan-Taek (2017): Arachidicoccus ginsenosidivorans sp. nov., with ginsenosideconverting activity isolated from ginseng cultivating soil. International Journal of Systematic and Evolutionary Microbiology 67 (4): 1005-1010, DOI: 10.1099/ijsem.0.001720, URL: http://dx.doi.org/10.1099/ijsem.0.001720
Files
Linked records
Additional details
Identifiers
- LSID
- urn:lsid:plazi.org:pub:62758417FFA5FF80836FCD51BB177B4F
- URL
- http://publication.plazi.org/id/62758417FFA5FF80836FCD51BB177B4F
References
- 1. Madhaiyan M, Poonguzhali S, Senthilkumar M, Pragatheswari D, Lee JS et al. Arachidicoccus rhizosphaerae gen. nov., sp. nov., a plant-growth-promoting bacterium in the family Chitinophagaceae isolated from rhizosphere soil. Int J Syst Evol Microbiol 2015;65: 578-586.
- 2. Lane DJ. 16S/23S rRNA sequencing. In: Stackebrandt E and Goodfellow M (editors). Nucleic Acid Techniques in Bacterial Systematics. Chichester: Wiley; 1991. pp. 115-176.
- 3. Im WT, Liu QM, Yang JE, Kim MS, Kim SY et al. Panacagrimonas perspica gen. nov., sp. nov., a novel member of Gammaproteobacteria isolated from soil of a ginseng field. J Microbiol 2010;48:262-266.
- 4. Kim OS, Cho YJ, Lee K, Yoon SH, Kim M et al. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 2012;62:716-721.
- 5. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 1997;25:4876-4882.
- 6. Hall TA. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 1999;41:95-98.
- 7. Kimura M. The Neutral Theory of Molecular Evolution. Cambridge: Cambridge University Press; 1983.
- 8. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987;4:406-425.
- 9. Fitch WM. Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 1971;20:406-416.
- 10. Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 2013;30:2725-2729.
- 11. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985;39:783-791.
- 12. Buck JD. Nonstaining (KOH) method for determination of Gram reactions of marine bacteria. Appl Environ Microbiol 1982;44:992-993.
- 13. Cowan ST, Steel KJ. Manual for the Identification of Medical Bacteria. Cambridge: Cambridge University Press; 1974.
- 14. Ten LN, Im WT, Kim MK, Kang MS, Lee ST. Development of a plate technique for screening of polysaccharide-degrading microorganisms by using a mixture of insoluble chromogenic substrates. J Microbiol Methods 2004;56:375-382.
- 15. L´anyi B. Classical and rapid identification methods for medically important bacteria. Methods Microbiol 1987;19:1-67.
- 16. Fautz E, Reichenbach H. A simple test for flexirubin-type pigments. FEMS Microbiol Lett 1980;8:87-91.
- 17. Moore DD, Dowhan D. Preparation and analysis of DNA. In: Ausubel FW, Brent R, Kingston RE, Moore DD, Seidman JG et al. (editors). Current Protocols in Molecular Biology. New York, NY: Wiley; 1995. pp. 2-11.
- 18. Mesbah M, Premachandran U, Whitman WB. Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 1989;39:159-167.
- 19. Minnikin DE, O 'Donnell AG, Goodfellow M, Alderson G, Athalye M et al. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 1984;2:233-241.
- 20. Hiraishi A, Ueda Y, Ishihara J, Mori T. Comparative lipoquinone analysis of influent sewage and activated sludge by highperformance liquid chromatography and photodiode array detection. J Gen Appl Microbiol 1996;42:457-469.
- 21. Sasser M. Identification of bacteria through fatty acid analysis. In: Klement Z, Rudolph K and Sands DC (editors). Methods in Phytobacteriology. Budapest: Akademiai Kaido; 1990. pp. 199-204.
- 22. Schenkel E, Berlaimont V, Dubois J, Helson-Cambier M, Hanocq M. Improved high-performance liquid chromatographic method for the determination of polyamines as their benzoylated derivatives: application to P388 cancer cells. J Chromatogr B Biomed Appl 1995;668:189-197.
- 23. Siddiqi MZ, Im WT. Pseudobacter ginsenosidimutans gen. nov., sp. nov., isolated from ginseng cultivating soil. Int J Syst Evol Microbiol 2016;66:3449-3455.
- 24. Siddiqi MZ, Im WT. Niabella aquatica sp. nov., isolated from lake water. Int J Syst Evol Microbiol 2016;66:2774-2779.
- 25. Siddiqi MZ, Muhammad Shafi S, Choi KD, Im WT. Compostibacter hankyongensis gen. nov., sp. nov., isolated from compost. Int J Syst Evol Microbiol 2016;66:3681-3687.
- 26. Siddiqi MZ, Muhammad Shafi S, Choi KD, Im WT. Panacibacter ginsenosidivorans gen. nov., sp. nov., with ginsenoside converting activity isolated from soil of a ginseng field. Int J Syst Evol Microbiol 2016;66:4039-4045.
- 27. Wang YX, Liu JH, Xiao W, Ma XL, Lai YH et al. Aliifodinibius roseus gen. nov., sp. nov., and Aliifodinibius sediminis sp. nov., two moderately halophilic bacteria isolated from salt mine samples. Int J Syst Evol Microbiol 2013;63:2907-2913.
- 28. Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O et al. International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 1987;37:463-464.