Genome binning of viral entities from bulk metagenomics data - HQ virus genomes
Description
Affiliations
1 Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen N, Denmark
2 Infectious Disease and Microbiome Program, Broad Institute of MIT and Harvard, Cambridge, MA, USA
3 Statens Serum Institut, Viral & Microbial Special diagnostics, Copenhagen, Denmark
4 National Food Institute, Technical University of Denmark, Kongens Lyngby, Denmark
5 Copenhagen Prospective Studies on Asthma in Childhood (COPSAC), Herlev and Gentofte Hospital, University of Copenhagen, Copenhagen, Denmark
6 Section of Food Microbiology and Fermentation, Department of Food Science, Faculty of Science, University of Copenhagen, Copenhagen, Denmark
7 Section of Microbiology, Department of Biology, University of Copenhagen, Copenhagen, Denmark
This upload is related to:
https://zenodo.org/record/5821973#.YhNojKpKhTY
Manuscript: https://www.nature.com/articles/s41467-022-28581-5
Methods description
Binned viral genomes, also sometimes referred to as viral MAGs (vMAGs), were mined from bulk metagenomics dataset in the paper including COPSAC (n=662) and HMP2 (n=1317).
The binned viruses were parsed with CheckV (Nayfach et al. 2021) to establish viral completeness and overall quality.
Here we upload the following for COPSAC and HMP2 datasets:
- CheckV quality summary for HQ viruses
- Sequences of binned HQ viruses
Files
Files
(155.2 MB)
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md5:93c384a0cec6353fde65c5f0de82d127
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36.0 MB | Download |
md5:de2d2cc3a22a82cc3b44a8e28b1fb47a
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119.2 MB | Download |
Additional details
Related works
- Is supplemented by
- 10.5281/zenodo.5821973 (DOI)