Published September 9, 2016
| Version v1
Software
Open
TransComb: genome-guided transcriptome assembly via combing junctions in splicing graphs
Creators
- 1. School of Mathematics, Shandong University, Jinan 250100, China
- 2. Department of Computer Science and Engineering, University of California, Riverside, CA 92521, USA
Description
This software is free, open source software released under the GNU General Public License. TransComb is an efficient genome-guided trascriptome assembler for RNA-seq data. It can assemble all transcripts from short paired-end reads using a reference genome and analyze their abundances. The software expects as input alignment file by Tophat2 BAM format, and ouput all assembled candidate transcripts in gtf format. This software is free to use, modify, redistribute without any restrictions, except including the license provided with the distribution.
Files
Files
(489.2 kB)
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