Dataset Open Access

Training material for RNA sequencing

Grüning, Björn; Erxleben, Anika; Houwaart, Torsten; Batut, Bérénice

RNA-seq (RNA sequencing) uses high-throughput (HTS) data to reveal the presence and quantity of RNA in a biological sample at a given moment in time.

RNA-Seq is used to analyze the continually changing cellular transcriptome. Specifically, RNA-Seq facilitates the ability to look at alternative gene spliced transcripts, post-transcriptional modifications, gene fusion, mutations/SNPs and changes in gene expression.[4] In addition to mRNA transcripts, RNA-Seq can look at different populations of RNA to include total RNA, small RNA, such as miRNA, tRNA, and ribosomal profiling.

Files (397.3 MB)
Name Size
dexseq.gtf
md5:51df689fc40c62fe062f6338f1e1c0f6
61.7 kB Download
Drosophila_melanogaster.BDGP5.78.gtf
md5:e07b8dcbd4f4f7602feeba0d5ed1698e
160.8 MB Download
GSM461176_untreat_single.counts
md5:7e61f6ec038c20a772517426e6aedbf5
220.0 kB Download
GSM461176_untreat_single_subset.fastq
md5:bba714969365c904694aa9d7c1199ffa
21.8 MB Download
GSM461177_untreat_paired.counts
md5:c2c45119a81e521aadb095d736734795
223.4 kB Download
GSM461177_untreat_paired_chr4.bam
md5:2ebb239b2c5e6b69cdc58c71d9687f83
2.3 MB Download
GSM461177_untreat_paired_deletions_chr4.bed
md5:a0397a240902b59a5ed2a2f099f9f169
1.5 kB Download
GSM461177_untreat_paired_insertions_chr4.bed
md5:28f7101716c48da1fdf73fe417cd1f02
1.5 kB Download
GSM461177_untreat_paired_junctions_chr4.bed
md5:a41ed3d89d724641ac3725186c4cbc64
16.3 kB Download
GSM461177_untreat_paired_subset_1.fastq
md5:4761559d7346f8f50b54e45baf1f5d77
20.0 MB Download
GSM461177_untreat_paired_subset_2.fastq
md5:80703dfef7466f02e00bbfac290c63f9
20.0 MB Download
GSM461178_untreat_paired.counts
md5:54a847d894b81f807fee1df41abc2400
223.7 kB Download
GSM461178_untreat_paired_chr4.bam
md5:443034086a5b6d725b33236c7eb213af
2.5 MB Download
GSM461178_untreat_paired_subset_1.fastq
md5:4a23f53bd2225612bed341c57e1e509c
20.2 MB Download
GSM461178_untreat_paired_subset_2.fastq
md5:48734f3ec8934f5f5d896828564171e0
20.2 MB Download
GSM461179_treat_single.counts
md5:738424537044299afe4b880e599653c7
220.4 kB Download
GSM461179_treat_single_subset.fastq
md5:17c8dcb4d90eb44a0be3a6f98715db6c
21.8 MB Download
GSM461180_treat_paired.counts
md5:5b9a37f0a4290bb059c588a064f638bd
223.2 kB Download
GSM461180_treat_paired_subset_1.fastq
md5:7722fb0de33678523d3a5a2881282780
20.2 MB Download
GSM461180_treat_paired_subset_2.fastq
md5:7405c4a0c53f327afd37aa8cfdecd1b2
20.2 MB Download
GSM461181_treat_paired.counts
md5:c084109958f4564db6dd41504c2ed61b
224.1 kB Download
GSM461181_treat_paired_subset_1.fastq
md5:d30e9acfddc84972d9839ca40d986b48
20.2 MB Download
GSM461181_treat_paired_subset_2.fastq
md5:b80b68ae42896ee4f5827861ebb7c8cf
20.2 MB Download
GSM461182_untreat_single.counts
md5:a4e56b63de0c6b336b31cb2e028a552f
220.6 kB Download
GSM461182_untreat_single_subset.fastq
md5:5fe0b62ceb9110461bdf074b24f1f346
25.4 MB Download
treated1_single.txt
md5:a37180010244cbae81c7714b2e7518eb
5.7 kB Download
treated2_paired.txt
md5:c732d339dd80bbc43ac8fdc66b754863
5.7 kB Download
treated3_paired.txt
md5:06ec93dfc4f11a8bc3d391f0e4e7dd95
5.7 kB Download
untreated1_single.txt
md5:1b48aec9197fae9a3f82f4d4512b805c
5.7 kB Download
untreated2_single.txt
md5:f00be8388c6d7890ce0d7c88ef90a932
5.7 kB Download
untreated3_paired.txt
md5:d31822f4b3683151f736e6937e1b236b
5.7 kB Download
untreated4_paired.txt
md5:58c9fc52d011634f2495afccd08bbee1
5.7 kB Download
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