Software Open Access

Pervasive Transcription-coupled DNA repair in E. coli

Britney Martinez

Code used to analyze data in the study "Pervasive Transcription-coupled DNA repair in E. coli".

Files (1.5 MB)
Name Size
1.5fold-threshold-justification.ipynb
md5:757b469256941bb077b1513b6699e9b3
33.3 kB Download
Average_CPD_counts.ipynb
md5:e3503f4ec6da0f81ef680551e2a6994c
36.6 kB Download
correlation_histograms.ipynb
md5:f1438241d59aae4a56ff226e9a305821
51.6 kB Download
end gene high antisense.ipynb
md5:3e727a6178d17038a21ab22c61f553b4
42.4 kB Download
frequency barplot.ipynb
md5:a861ef6b70a6321c5db3817ea21cf5f8
13.9 kB Download
mfd over expression.ipynb
md5:4d5dc15ecb5c48ef72d77982e88acc0c
22.9 kB Download
more_windows_endgene_highNTS.ipynb
md5:ac5a68145644ab41317e092653e058f8
41.2 kB Download
NTS box plots.ipynb
md5:c394d374fdb79b89f3efc5786d976254
16.9 kB Download
pos_count.py
md5:87d2b9fee62aa816446e66b8fb17436c
3.0 kB Download
repair where mfd increases NTS transcription.ipynb
md5:49628632d02d0a274cf58c2e549a00a7
41.7 kB Download
rho box plots.ipynb
md5:806e81314690957530052e661f8beddf
74.7 kB Download
rho scatterplots.ipynb
md5:fab1b571997b8efec5e91dac90b2fcd6
462.3 kB Download
rho_mut_term_efficiency.ipynb
md5:70eb1dc626545a1b6053137f66c67aba
58.0 kB Download
transcription level boxplots (mfd).ipynb
md5:4a6b52ba15bec0bcfd3904df88b33ef5
46.0 kB Download
UV-mfd rnaseq scatterplots.ipynb
md5:377cb73e9f9a4e341b31ebf84a1db98a
290.2 kB Download
UV-termination efficiency.ipynb
md5:be1ef01bc89eeedd878b50f6481256e2
84.9 kB Download
wt-lexa.ipynb
md5:bb50a77ea8ac24dacdec336719f05e4f
70.9 kB Download
wt-transcription level box plots .ipynb
md5:f8b51e6ef5774d23854e5bf6ebbcd164
45.1 kB Download
wt_mfd_rif plots.ipynb
md5:96146a9b98f40e582a0f3fce8ff8f0de
40.4 kB Download
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Data volume 1.7 MB1.7 MB
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