Reference brains for registration to Zebrafish Brain Browser
Creators
- 1. Eunice Kennedy Shriver National Institute of Child Health and Human Development
Description
Collection of larval zebrafish brain images that can be used to register confocal stacks to the Zebrafish Brain Browser.
Please see the Excel spreadsheet for descriptions of each file including the expression pattern within the brain. There are several options for registration using a pan-neuronal driver such as huC, and you may need to test several to determine which is the best match to the reference channel that you are using.
The vglut-ref-01.nii.gz is the original reference brain used to construct ZBB and will likely provide the most precise registrations. All other files were registered to ZBB using the vglut reference or other bridging registrations.
File are 1 µm isotropic resolution except for those with R2 in the filename, which are 2 µm in each dimension.
For information on the registration procedure, please see Marquart GD, Tabor KM, Horstick EJ, Brown M and Burgess HA (2017) High precision registration between zebrafish brain atlases using symmetric diffeomorphic normalization. GigaScience. 6:1-15.
Files
Files
(4.2 GB)
| Name | Size | Download all |
|---|---|---|
|
md5:08410ee79f4cc1b26ffaa53306c956a9
|
371.6 MB | Download |
|
md5:a84f035665c527c252d8f1099bafa4e6
|
17.3 kB | Download |
|
md5:7f8be92cbee07b514c8e5844874e5758
|
255.0 MB | Download |
|
md5:ac72a6bb5311ada957c710da513434e2
|
321.7 MB | Download |
|
md5:2a1c045c4a45433162172951dcadfc99
|
245.6 MB | Download |
|
md5:c39e52a58fcbf39822a8e36bb5c519d1
|
299.2 MB | Download |
|
md5:f81f10376cf175b2c0f08cd0e9ff5b61
|
104.3 MB | Download |
|
md5:0079c26871de6be54288aca7d27987fc
|
309.3 MB | Download |
|
md5:e06b31a39a6c2a7631fee57bf5b348b7
|
316.0 MB | Download |
|
md5:ef0aa0001018eb5c989c484288f198b3
|
359.6 MB | Download |
|
md5:4de28cdc0e56e7bff0516cf576f5043a
|
308.4 MB | Download |
|
md5:323600abd49fb5b3c6fb21badbd970dd
|
448.6 MB | Download |
|
md5:394a8ee0a5a21943db405d3a54dc6538
|
45.0 MB | Download |
|
md5:57b60eb369db0f878b4a3c8ef6f58e9d
|
323.4 MB | Download |
|
md5:1b4da4b2f3cbf7b4c9d099f80ff5e8b0
|
253.6 MB | Download |
|
md5:ca64d22890ab53f8fcb366388afc03b0
|
36.4 MB | Download |
|
md5:2dace2f53e2dc14f260938ea0092b47c
|
149.3 MB | Download |
|
md5:3b48735dffde0a4e3dfc458afed47918
|
16.3 MB | Download |
Additional details
References
- Marquart GD, Tabor KM, Horstick EJ, Brown M and Burgess HA (2017) High precision registration between zebrafish brain atlases using symmetric diffeomorphic normalization. GigaScience. 6:1-15