Published July 20, 2016 | Version v2.3.0
Software Open

vcfnp: v2.3.0

Creators

  • 1. University of Oxford
  • 2. UC Davis
  • 3. Oxford University

Description

  • Fixed a bug in the vcf2hdf5_parallel script (#58 - @travc).
  • Fixed a bug relating to the is_snp field (#60 - @podpearson).
  • Removed numpy as a build dependency (#46).
  • Increased the default dtype size for the EFF Amino_Acid_Change field (#62 - @travc).
  • Ensure vcflib doesn't call system exit(1) but raises exceptions instead (#48).
  • Added --compress option to vcf2npy script to support saving to .npz files instead of .npy (#59).
  • Added support for new calldata fields genotype_ac and ploidy to provide support for VCF files with variable ploidy (#63).

Files

vcfnp-v2.3.0.zip

Files (218.6 kB)

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Additional details

Related works

Is supplement to
https://github.com/alimanfoo/vcfnp/tree/v2.3.0 (URL)