Published December 7, 2021
| Version v2.0.0
Software
Open
MIT-LCP/mimic-code: MIMIC Code v2.0.0
Creators
- Alistair Johnson1
- Tom Pollard2
- Jim Blundell
- Brian Gow
- erinhong
- Nicolas Paris
- shu98
- JackieMe3
- Kien Dang
- Angus Zhang4
- Eric Carlson
- Qinyu Zhao
- etheleon5
- Andrew Barros
- Lucas Bulgarelli6
- Hans0124SG
- Peter Szolovits7
- Sicheng Hao
- C. V. Cosgriff8
- Sravan R9
- Thomas M Ward
- Bibo Hao10
- Chen Xie
- emilyva
- Fernando Andreotti11
- Ishrar Hussain
- James Wiggins
- Josh Gieringer
- Nikhil Haas
- Thijs van den Berg12
- 1. @mit-lcp
- 2. MIT
- 3. WHU
- 4. Wenzhou Medical University
- 5. @honestbee @fundMyLife @airasia
- 6. @MIT-LCP
- 7. MIT CSAIL
- 8. HUP
- 9. National University Of Singapore
- 10. https://haobibo.cn
- 11. Sensyne Health / Institute of Biomedical Engineering, University of Oxford
- 12. Hogeschool Utrecht
Description
This is the first release with the new repository organization where all MIMIC related code is located here, including MIMIC-III, MIMIC-IV, MIMIC-IV-ED, and MIMIC-CXR. Many thanks to @briangow for so much effort in doing this reorganization!
Change log:
- A GitHub action workflow now regenerates BigQuery tables upon publish of a release, ensuring BigQuery is synchronized with the latest release of the code.
- Added MIMIC-IV and MIMIC-IV-ED build scripts.
- Added MIMIC-IV and MIMIC-IV-ED concepts.
- Added code for parsing MIMIC-CXR DICOMs (dcm) and deidentified free-text reports (txt) - this is the mimic-iv-cxr subfolder here (the mimic-iv prefix helps clarify this data can be used with MIMIC-IV - i.e. mimic-iv-cxr is synonymous with MIMIC-CXR).
- Added version of MIMIC-IV concepts in the PostgreSQL dialect. These concepts are (mostly) automatically generated using a shell script from the BigQuery syntax.
- Various bug fixes for MIMIC concepts.
Files
MIT-LCP/mimic-code-v2.0.0.zip
Files
(7.0 MB)
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md5:a26754a3fd79471fb6e582d1480fb665
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Additional details
Related works
- Is supplement to
- https://github.com/MIT-LCP/mimic-code/tree/v2.0.0 (URL)