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Taxonomy, phylogeny, and diversity of the extinct Lesser Antillean rice rats (Sigmodontinae: Oryzomyini), with description of a new genus and species

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Turvey, Samuel T., Weksler, Marcelo, Morris, Elaine L., Nokkert, Mark (2010): Taxonomy, phylogeny, and diversity of the extinct Lesser Antillean rice rats (Sigmodontinae: Oryzomyini), with description of a new genus and species. Zoological Journal of the Linnean Society 160 (4): 748-772, DOI: 10.1111/j.1096-3642.2009.00628.x, URL: http://dx.doi.org/10.1111/j.1096-3642.2009.00628.x

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References

  • Alcover JA, Campillo X, Macias M, Sans A. 1998. Mammal species of the world: additional data on insular mammals. American Museum Novitates 3248: 1-29.
  • Allen JA. 1912. Mammals from western Colombia. Bulletin of the American Museum of Natural History 31: 71-95.
  • Allen GM. 1942. Extinct and vanishing mammals of the Western Hemisphere with the marine species of all the oceans. Washington, DC: American Committee for International Wild Life Protection, Special Publication 11.
  • Balouet J-C, Alibert E. 1990. Extinct species of the world. New York: Baron's Educational Series Inc.
  • Branch CW. 1907. Aboriginal antiquities in Saint Kitts and Nevis. American Anthropologist 9: 315-333.
  • Bremer K. 1988. The limits of amino-acid sequence data in angiosperm phylogenetic reconstruction. Evolution 42: 795- 803.
  • Bremer K. 1994. Branch support and tree stability. Cladistics 10: 295-304.
  • Bronk Ramsey C. 1995. Radiocarbon calibration and analysis of stratigraphy: the OxCal program. Radiocarbon 37: 425-430.
  • Bronk Ramsey C. 2001. Development of the radiocarbon calibration program OxCal. Radiocarbon 43: 355-363.
  • Burness GP, Diamond J, Flannery T. 2001. Dinosaurs, dragons and dwarfs: the evolution of maximal body size. Proceedings of the National Academy of Sciences of the United States of America 98: 14518-14523.
  • Carleton MD, Musser GG. 1989. Systematic studies of oryzomyine rodents (Muridae, Sigmodontinae): a synopsis of Microryzomys. Bulletin of the American Museum of Natural History 191: 1-83.
  • Carleton MD, Olson SL. 1999. Amerigo Vespucci and the rat of Fernando de Noronha: a new genus and species of Rodentia (Muridae: Sigmodontinae) from a volcanic island off Brazil's continental shelf. American Museum Novitates 3256: 1-59.
  • Crock JG. 2000. Interisland interaction and the development of chiefdoms in the Eastern Caribbean. Unpublished PhD thesis, University of Pittsburgh.
  • Crosby A. 2003. The prehistoric communities: the Hichman's landscape. In: Morris E, Leech R, Crosby A, Machling T, Williams B, Heathcote J, eds. Nevis Heritage Project interim report 2002. Southampton: University of Southampton, 8-30.
  • Diaz-Franco S, Jimenez Vazquez O. 2008. Geocapromys brownii (Rodentia: Capromyidae: Capromyinae) en Cuba. Solenodon 7: 41-47.
  • Drake DR, Hunt TL. 2008. Invasive rodents on islands: integrating historical and contemporary ecology. Biological Invasions 11: 1483-1487. doi: 10.1007/s10530-008-9392-1
  • Evans C. 1968. The lack of archeology on Dominica. In: RP Bullen, ed. Proceedings of the Second International Congress for the study of Pre-Columbian cultures in the Lesser Antilles. Bridgetown, Barbados: Barbados Museum, 93-102.
  • Farris JS, Albert VA, Kallersjo M, Lipscomb D, Kluge AG. 1996. Parsimony jackknifing outperforms neighborjoining. Cladistics 12: 99-124.
  • Feilden HW. 1890. Notes on the terrestrial mammals of Barbados. Zoologist Series 3 14: 52-55.
  • Fischer JB. 1829. Synopsis mammalium. Stuttgart: JG Cottae.
  • Flannery T, Schouten P. 2001. A gap in nature: discovering the world's extinct animals. London: William Heinemann.
  • Forsyth Major CI. 1901. The musk-rat of Santa Lucia (Antilles). Annals and Magazine of Natural History Series 7 7: 204-206.
  • Friant M. 1941. Notes anatomiques sur les Megalomys des Antilles. Bulletin de la Societe zoologique de France 66: 122-129.
  • Friant M, Hoffstetter R, Chabanaud P. 1940. Appendice sur la faune precolombienne de l'Anse-Belleville. Journal de la Societe des Americanistes 32: 259-274.
  • Gervais P. 1854. Histoire naturelle des mammiferes, avec l'indication de leurs moeurs, et de leurs rapports avec les arts, le commerce et l'agriculture. Primates, cheiropteres, insectivores et rongeurs. Paris: Curmer.
  • Gullick MI. 1980. Changing Carib cookery. Proceedings of the Eighth International Congress for the Study of Pre- Columbian Cultures of the Lesser Antilles, 481-487.
  • Harlow VT, ed. 1925. Colonising expeditions to the West Indies and Guiana, 1632-1667. London: The Hakluyt Society.
  • Harris DB. 2008. Review of negative effects of introduced rodents on small mammals on islands. Biological Invasions 11: 1611-1630. doi: 10.1007/s10530-008-9393-0
  • Harris DB, Gregory SD, Macdonald DW. 2006. Space invaders? A search for patterns underlying the coexistence of alien black rats and Galapagos rice rats. Oecologia 149: 276-288.
  • Harris DB, Macdonald DW. 2007. Interference competition between introduced black rats and endemic Galapagos rice rats. Ecology 88: 2330-2344.
  • Haviser J. 1997. Settlement strategies in the Early Ceramic
  • Hedges SB. 2006. Paleogeography of the Antilles and origin of West Indian terrestrial vertebrates. Annals of the Missouri Botanical Garden 93: 231-244.
  • Hershkovitz P. 1944. Systematic review of the Neotropical water rats of the genus Nectomys (Cricetinae). Miscellaneous Publications of the Museum of Zoology, University of Michigan 58: 1-101.
  • Hershkovitz P. 1969. The evolution of mammals on southern continents. VI. The Recent mammals of the Neotropical region: a zoogeographic and ecological review. The Quarterly Review of Biology 44: 1-70.
  • Hershkovitz P. 1970. Supplementary notes on Neotropical Oryzomys dimidiatus and Oryzomys hammondi (Cricetinae). Journal of Mammalogy 51: 789-794.
  • Higman BW. 2008. Jamaican food: history, biology, culture. University of the West Indies Press, Kingston.
  • Hoffman CA Jr. 1973. Archaeological investigations on St. Kitts, W.I. Caribbean Journal of Science 13: 237-245.
  • Hoogland MLP. 1996. In search of the native population of Pre-Columbian Saba (400-1450 AD). Part Two: settlements in their natural and social environment. Unpublished PhD thesis, University of Leiden, The Netherlands.
  • Hooijer DA. 1959. Fossil rodents from Curacao and Bonaire. Studies on the Fauna of Curacao and other Caribbean Islands 9: 1-27.
  • Hooijer DA. 1966. Fossil mammals of the Netherlands Antilles. Archives Neerlandaises de Zoologie 16: 531-532.
  • Hooijer DA. 1967. Pleistocene vertebrates of the Netherlands Antilles. In: Martin PS, Wright HE Jr, eds. Pleistocene extinctions: the search for a cause. New Haven: Yale University Press, 399-406.
  • Hopwood AT. 1926. A fossil rice-rat from the Pleistocene of Barbuda. Annals and Magazine of Natural History, Series 9 17: 328-330.
  • Horst GR, Hoagland DB, Kilpatrick CW. 2001. The mongoose in the West Indies: the biogeography and population biology of an introduced species. In: Woods CA, Sergile FE, eds. Biogeography of the West Indies: patterns and perspectives, 2nd edn. Boca Raton, FL: CRC Press, 409-424.
  • Isaac NJB, Turvey ST, Collen B, Waterman C, Baillie JEM. 2007. Mammals on the EDGE: conservation priorities based on threat and phylogeny. PLoS ONE 2: e296.
  • IUCN. 2008. 2008 IUCN Red List of threatened species. Available at http://www.iucnredlist.org
  • Johnson C. 2006. Australia's mammal extinctions: a 50000 year history. Cambridge: Cambridge University Press.
  • Jones AR. 1985. Dietary change and human population at Indian Creek, Antigua. American Antiquity 50: 518-536.
  • Keegan WF. 2000. West Indian archaeology. 3. Ceramic Age. Journal of Archaeological Research 8: 135-167.
  • Kishino H, Hasegawa M. 1989. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. Journal of Molecular Evolution 29: 170-179.
  • van der Klift HM. 1992. Faunal remains of the Golden Rock site. In: Versteeg AH, Schinkel K, eds. The archaeology of St. Eustatius: the Golden Rock site. Tilburg: ELKA Drukkerijen BV. Publication of the St. Eustatius Historical Foundation 2; Publication of the Foundation for Scientific Research in the Caribbean Region 131, 74-84.
  • Kozuch L, Wing ES. 2006. Animal remains from archaeological sites on Nevis. In: Wilson SM, ed. The prehistory of Nevis, a small island in the Lesser Antilles. New Haven, CT: Yale University Publications in Anthropology 87, Peabody Museum of Natural History, 145-186.
  • Lambeck K, Chappell J. 2001. Sea level change through the last glacial cycle. Science 292: 679-686.
  • LeFebvre MJ. 2007. Zooarchaeological analysis of prehistoric vertebrate exploitation at the Grand Bay Site, Carriacou, West Indies. Coral Reefs 26: 931-944.
  • Lenglet G, Coppois G. 1979. Description du crane et de quelques ossements d'un genre nouveau eteint de Cricetidae (Mammalia-Rodentia) geant des Galapagos: Megaoryzomys (gen. nov.). Bulletin de l'Academie Royale de Belgique (Classe des Sciences), 5th Series 65: 632-648.
  • Lippold LK. 1991. Animal resource utilization by Saladoid people at Pearls. In: Ayubi EN, Haviser JB, eds. Proceedings of the Thirteenth Congress of the International Association for Caribbean Archaeology. Curacao: Anthropological Institute of the Netherlands Antilles, 264-268.
  • Lomolino MV, Channell R, Perault DR, Smith GA. 2001. Downsizing nature: anthropogenic dwarfing of species and ecosystems. In: McKinney M, Lockwood J, eds. Biotic homogenization: the loss of diversity through invasion and extinction. New York: Kluwer Academic/Plenum, 223- 243.
  • Lorvelec O, Pascal M, Delloue X, Chapuis J-L. 2007. Les mammiferes terrestres non volants des Antilles Francaises et l'introduction recente d'un ecureuil. Revue d'Ecologie (Terre et Vie) 62: 295-314.
  • McCain CM, Timm RM, Weksler M. 2007. Redescription of the enigmatic long-tailed rat Sigmodontomys aphrastus (Cricetidae: Sigmodontinae) with comments on taxonomy and natural history. Proceedings of the Biological Society of Washington 120: 117-136.
  • McFarlane DA, Debrot AO. 2001. A new species of extinct oryzomyine rodent from the Quaternary of Curacao, Netherlands Antilles. Caribbean Journal of Science 37: 182-184.
  • McFarlane DA, Lundberg J. 2002. A Middle Pleistocene age and biogeography for the extinct rodent Megalomys curazensis from Curacao, Netherlands Antilles. Caribbean Journal of Science 38: 278-281.
  • McFarlane DA, MacPhee RDE, Ford DC. 1998. Body size variability and a Sangamonian extinction model for Amblyrhiza, a West Indian megafaunal rodent. Quaternary Research 50: 80-89.
  • MacPhee RDE. 2009. Insulae infortunatae: establishing a chronology for Late Quaternary mammal extinctions in the West Indies. In: Haynes G, ed. American megafaunal extinctions at the end of the Pleistocene. Dordrecht: Springer, 169-193.
  • MacPhee RDE, Flemming C. 1999. Requiem aeternam: the last five hundred years of mammalian species extinctions. In: MacPhee RDE, ed. Extinctions in near time: causes, contexts, and consequences. New York: Kluwer Academic/ Plenum, 333-371.
  • MacPhee RDE, Ford DC, McFarlane DA. 1989. Pre- Wisconsinan mammals from Jamaica and models of Late Quaternary extinction in the Greater Antilles. Quaternary Research 31: 94-106.
  • Marsh RE. 1984. Evidence does not support the existence of a Bajan mouse. Journal of the Barbados Museum and Historical Society 37: 159-160.
  • Marsh RE. 1985. More about the Bajan mouse. Journal of the Barbados Museum and Historical Society 37: 310.
  • Merrill GC. 1958. The historical record of man as an ecological dominant in the Lesser Antilles. Canadian Geographer 3: 17-22.
  • Miller GS Jr. 1929. Mammals eaten by Indians, owls, and Spaniards in the coast region of the Dominican Republic. Smithsonian Miscellaneous Collections 82: 1-16.
  • Miller GS Jr. 1930. Three small collections of mammals from Hispaniola. Smithsonian Miscellaneous Collections 82: 1-10.
  • Morgan GS, Woods CA. 1986. Extinction and the zoogeography of West Indian land mammals. Biological Journal of the Linnean Society 28: 167-203.
  • Musser GG, Carleton MD. 1993. Family Muridae. In: Wilson DE, Reeder DM, eds. Mammal species of the world: a taxonomic and geographic reference, 2nd edn. Washington, D.C: Smithsonian Institution Press, 501-755.
  • Musser GG, Carleton MD. 2005. Superfamily Muroidea. In: Wilson DE, Reeder DM, eds. Mammal species of the world: a taxonomic and geographic reference, 3rd edn. Baltimore: Johns Hopkins University Press, 894-1531.
  • Newsom LA, Wing ES. 2004. On land and sea. Native American uses of biological resources in the West Indies. Tuscaloosa & London: University of Alabama Press.
  • Nokkert M. 1999. Faunal exploitation. In: Hofman CL, Hoogland MLP, eds. Archaeological investigations on St. Martin (Lesser Antilles). The sites of Norman Estate, Anse de Peres, and Hope Estate, with a contribution to the 'La Hueca Problem'. Leiden: ASLU 4, 51-60.
  • Nokkert M. 2002. Preliminary report on faunal remains from 2002 excavations at Hichman's (GE-5), Nevis. Unpublished report, University of Southampton.
  • Olson SL, Maiz Lopez EJ. 2008. New evidence of Ara autochthones from an archeological site in Puerto Rico: a valid species of West Indian macaw of unknown geographical origin (Aves: Psittacidae). Caribbean Journal of Science 44: 215-222.
  • Patton JL, Hafner MS. 1983. Biosystematics of the native rodents of the Galapagos Archipelago, Ecuador. In: Bowman RI, Benson M, Leviton AE, eds. Patterns of evolution in Galapagos organisms. San Francisco: American Association for the Advancement of Science, Pacific Division, 539-568.
  • Petersen JB. 1996. Archaeology of Trants, Montserrat. Part 3. Chronological and settlement data. Annals of Carnegie Museum 65: 323-361.
  • Pregill GK, Olson SL. 1981. Zoogeography of West Indian vertebrates in relation to Pleistocene climatic cycles. Annual Review of Ecology and Systematics 12: 75-98.
  • Pregill GK, Steadman DW, Watters DR. 1994. Late Quaternary vertebrate faunas of the Lesser Antilles: historical components of Caribbean biogeography. Bulletin of the Carnegie Museum of Natural History 30: 1-51.
  • Purvis A, Agapow PM, Gittleman JL, Mace GM. 2000. Nonrandom extinction and the loss of evolutionary history. Science 288: 328-330.
  • Ray CE. 1962. Oryzomyine rodents of the Antillean subregion. Unpublished PhD thesis, Harvard University.
  • Reig OA. 1987. An assessment of the systematics and evolution of the Akodontini, with the description of new fossil species of Akodon (Cricetidae, Sigmodontinae). Fieldiana: Zoology (New Series) 39: 347-399.
  • Rouse I, Morse BF. 1999. Excavations at the Indian Creek Site, Antigua, West Indies. New Haven, CT: Yale University Publications in Anthropology 82, Peabody Museum of Natural History.
  • Santori RT, Vieira MV, Rocha-Barbosa O, Magnan-Neto JA, Gobbi N. 2008. Water absorption of the fur and swimming behavior of semiaquatic and terrestrial oryzomine rodents. Journal of Mammalogy 89: 1152-1161.
  • Schinkel K. 1992. The Golden Rock features. In: Versteeg AH, Schinkel K, eds. The archaeology of St. Eustatius: the Golden Rock site. Tilburg: ELKA Drukkerijen BV. Publication of the St. Eustatius Historical Foundation 2; Publication of the Foundation for Scientific Research in the Caribbean Region 131, 143-212.
  • Schomburgk RH. 1848. The history of Barbados. London: Longman, Brown, Green & Longmans.
  • Sorenson MD, Franzosa EA. 2007. Treerot, version 3. Boston, MA: Boston University.
  • Steadman DW, Hilgartner WB. 1999. A new species of extinct barn owl (Aves: Tyto) from Barbuda, Lesser Antilles. Smithsonian Contributions to Paleobiology 89: 75-83.
  • Steadman DW, Pregill GK, Olson SL. 1984a. Fossil vertebrates from Antigua, Lesser Antilles: evidence for late Holocene human-caused extinctions in the West Indies. Proceedings of the National Academy of Sciences of the United States of America 81: 4448-4451.
  • Steadman DW, Ray CE. 1982. The relationships of Megaoryzomys curioi, an extinct cricetine rodent (Muroidea: Muridae) from the Galapagos Islands, Ecuador. Smithsonian Contributions to Paleobiology 51: 1-23.
  • Steadman DW, Watters DR, Reitz EJ, Pregill GK. 1984b. Vertebrates from archaeological sites on Montserrat, West Indies. Annals of Carnegie Museum 53: 1-29.
  • Stein BR. 1988. Morphology and allometry in several genera of semiaquatic rodents (Ondatra, Nectomys, and Oryzomys). Journal of Mammalogy 69: 500-511.
  • Swofford DL. 2001. Paup*. Phylogenetic analysis using parsimony (*and other methods), v. 4.0b10. Sunderland, MA: Sinauer.
  • Tate GHH. 1932a. The taxonomic history of the Neotropical cricetid genera Holochilus, Nectomys, Scapteromys, Megalomys, Tylomys and Ototylomys. American Museum Novitates 562: 1-19.
  • Tate GHH. 1932b. The taxonomic history of the South and Central American cricetid rodents of the genus Oryzomys. - Part 2: subgenera Oligoryzomys, Thallomyscus, and Melanomys. American Museum Novitates 580: 1-17.
  • Thomas O. 1898. On indigenous Muridae in the West Indies; with the description of a new Mexican Oryzomys. Annals and Magazine of Natural History 7: 176-180.
  • Towns D, Atkinson I, Daugherty C. 2006. Have the harmful effects of introduced rats on islands been exaggerated? Biological Invasions 8: 863-891.
  • Trejo-Torres JC, Ackerman JD. 2001. Biogeography of the Antilles based on a parsimony analysis of orchid distributions. Journal of Biogeography 28: 775-794.
  • Turvey ST, ed. 2009. Holocene extinctions. Oxford: Oxford University Press.
  • Turvey ST, Grady FV, Rye P. 2006. A new genus and species of 'giant hutia' (Tainotherium valei) from the Quaternary of Puerto Rico: an extinct arboreal quadruped? Journal of Zoology 270: 585-594.
  • Turvey ST, Oliver JR, Narganes Storde Y, Rye P. 2007. Late Holocene extinction of Puerto Rican native land mammals. Biology Letters 3: 193-196.
  • Vazquez-Miranda H, Navarro-Siguenza AG, Morrone JJ. 2007. Biogeographical patterns of the avifaunas of the Caribbean Basin Islands: a parsimony perspective. Cladistics 23: 180-200.
  • Voss RS. 1988. Systematics and ecology of ichthyomyine rodents (Muroidea): patterns of morphological evolution in a small adaptive radiation. Bulletin of the American Museum of Natural History 188: 259-493.
  • Voss RS, Weksler M. 2009. On the taxonomic status of Oryzomys curasoae McFarlane and Debrot, 2001, with remarks on the phylogenetic relationships of O. gorgasi Hershkovitz, 1971. Caribbean Journal of Science 45: 1- 7.
  • de Waal MS. 1996. The Petite Riviere excavations, La Desirade, French West Indies: fieldwork report and subsistence studies for a pre-Columbian site with Late Saladoid and post-Saladoid components. Unpublished MA thesis, University of Leiden, The Netherlands.
  • Weksler M. 2003. Phylogeny of Neotropical oryzomyine rodents (Muridae: Sigmodontinae) based on the nuclear IRBP exon. Molecular Phylogenetics and Evolution 29: 331- 349.
  • Weksler M. 2006. Phylogenetic relationships of the oryzomyine rodents (Muroidea: Sigmodontinae): separate and combined analyses of morphological and molecular data. Bulletin of the American Museum of Natural History 296: 1-149.
  • Weksler M, Percequillo AR, Voss RS. 2006. Ten new genera of oryzomyine rodents (Cricetidae: Sigmodontinae). American Museum Novitates 3537: 1-29.
  • Wiens JJ. 1995. Polymorphic characters in phylogenetic systematics. Systematic Biology 44: 482-500.
  • Wilkinson M. 1995. Arbitrary resolutions, missing entries, and the problem of zero-length branches in parsimony analysis. Systematic Biology 44: 108-111.
  • Wilson SM, ed. 1997. The indigenous people of the Caribbean. Gainesville: University Press of Florida.
  • Wilson SM. 2001. The prehistory and early history of the Caribbean. In: Woods CA, Sergile FE, eds. Biogeography of the West Indies: patterns and perspectives, 2nd edn. Boca Raton, FL: CRC Press, 519-527.
  • Wilson SM. 2006. The prehistory of Nevis, a small island in the Lesser Antilles. New Haven, CT: Yale University Publications in Anthropology 87, Peabody Museum of Natural History.
  • Wing ES. 1973. Notes on the faunal remains excavated from St. Kitts, West Indies. Caribbean Journal of Science 13: 253-255.
  • Wing ES. 2001a. The sustainability of resources used by Native Americans on four Caribbean islands. International Journal of Osteoarchaeology 11: 112-126.
  • Wing ES. 2001b. Native American use of animals in the Caribbean. In: Woods CA, Sergile FE, eds. Biogeography of the West Indies: patterns and perspectives, 2nd edn. Boca Raton, FL: CRC Press, 481-518.
  • Wing ES, Hoffman CA Jr, Ray CE. 1968. Vertebrate remains from Indian sites on Antigua, West Indies. Caribbean Journal of Science 8: 123-139.
  • Wing ES, Scudder S. 1980. Use of animals by the prehistoric inhabitants of St. Kitts, West Indies. In: Lewenstein SM, ed. Proceedings of the Eighth International Congress for the study of Pre-Columbian cultures in the Lesser Antilles. Tempe: Arizona State University Anthropology Research Papers No. 22, 237-245.
  • Woods CA. 1989. The biogeography of West Indian rodents. In: Woods CA, ed. Biogeography of the West Indies: past, present, and future. Gainesville, FL: Sandhill Crane Press, 741-798.
  • Wyatt KB, Campos PF, Gilbert MTP, Kolokotronis S-O, Hynes WH, DeSalle R, Daszak P, MacPhee RDE, Greenwood AD. 2008. Historical mammal extinction on Christmas Island (Indian Ocean) correlates with introduced infectious disease. PLoS ONE 3: e3602.