Host and pathogen gene expression profiles in Necrotizing Soft Tissue Infections

Data underlying the article

Analysis of host-pathogen gene association networks reveals patient-specific response to streptococcal and poly-microbial necrotizing soft tissue infections

Sanjeevan Jahagirdar¹, Lorna Morris², Nirupama Benis³, Oddvar Oppegaard⁴, Mattias Svenson⁵, Ole Hyldegaard⁶, Steinar Skrede^4,7, Anna Norrby-Teglund⁵, INFECT Study group, Vitor A. P. Martins dos Santos^1,2, Edoardo Saccenti^1*

^Contains

Data described in 4.3.2 Sample Selection and in Figure 6:

INFECT_DualRNASeq_norm_counts_Human.txt  Normalised counts from Kallisto mapping to GRCh38 (release 91) for 81 NSTI patients

INFECT_DualRNASeq_relative_abundance_Bacteria.txt Relative abundance for all species from HumanN2 mapping for 81 NSTI patients

BStrep_filtered_D1 - INFECT_DualRNASeq_relative_abundance_Bacteria.txt filtered for samples classified as Streptococcal from Thänert et al (2019) taken on the day of admission (day 1).

BPoly_filtered_D1 - INFECT_DualRNASeq_relative_abundance_Bacteria.txt filtered for samples classified as polymicrobial from Thänert et al (2019) taken on the day of admission (day 1).

HStrep_filtered_D1 - INFECT_DualRNASeq_norm_counts_Human.txt filtered for samples classified as Streptococcal from Thänert et al (2019) taken on the day of admission (day 1).

HPoly_filtered_D1 - INFECT_DualRNASeq_norm_counts_Human.txt filtered for samples classified as polymicrobial from Thänert et al (2019) taken on the day of admission (day 1).