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FED-AMR D2.5: Shotgun Sequencing: ARG Diversity in Tested Environmental Compartments (T2.3.1)

Caniça, Manuela; Cabal Rosel, Adriana

In this sub-task we performed the analysis of DNA sequence data from the shotgun sequencing of soil, water, manure and faeces samples from the FED-AMR consortium. The sequencing was carried out using Illumina sequencing technologies and it was applicable to samples sequenced with gene enrichment. Both NGS and gene enrichment were carried out by an external Company using ARESdb (Ferreira et al., 2020).

 

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