Project deliverable Open Access
FED-AMR D2.5: Shotgun Sequencing: ARG Diversity in Tested Environmental Compartments (T2.3.1)
Caniça, Manuela; Cabal Rosel, Adriana
In this sub-task we performed the analysis of DNA sequence data from the shotgun sequencing of soil, water, manure and faeces samples from the FED-AMR consortium. The sequencing was carried out using Illumina sequencing technologies and it was applicable to samples sequenced with gene enrichment. Both NGS and gene enrichment were carried out by an external Company using ARESdb (Ferreira et al., 2020).
Files
(883.4 kB)
| Name | Size | |
|---|---|---|
|
D-JRP15-FED-AMR-WP2.5_FINAL.pdf
md5:702720b6ca07e8b5010f02238ad7aa83 |
883.4 kB | Download |
65
33
views
downloads
| All versions | This version | |
|---|---|---|
| Views | 65 | 65 |
| Downloads | 33 | 33 |
| Data volume | 29.2 MB | 29.2 MB |
| Unique views | 58 | 58 |
| Unique downloads | 29 | 29 |
Indexed in
- Publication date:
- November 10, 2021
- DOI:
-
- Keyword(s):
- FED-AMR NGS environmental samples
- Grants:
-
European Commission:
- One Health EJP - Promoting One Health in Europe through joint actions on foodborne zoonoses, antimicrobial resistance and emerging microbiological hazards. (773830)
- Communities:
- License (for files):
- Creative Commons Attribution 4.0 International