Published July 6, 2016 | Version v1
Software Open

Structure_threader

Creators

  • 1. Computational Biology and Population Genomics Group, Centre for Ecology, Evolution and Environmental Changes, Departamento de Biologia Animal, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, 1749-016 Lisboa, Portugal; Departamento de Biologia e CESAM, Univ. de Aveiro, Portugal
  • 2. Computational Biology and Population Genomics Group, Centre for Ecology, Evolution and Environmental Changes, Departamento de Biologia Animal, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, 1749-016 Lisboa, Portugal; Instituto Superior de Agronomia, Universidade de Lisboa, CIFC - Centro de Investigação das Ferrugens do Cafeeiro, Oeiras, PT.
  • 3. INSA
  • 4. Computational Biology and Population Genomics Group, Centre for Ecology, Evolution and Environmental Changes, Departamento de Biologia Animal, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, 1749-016 Lisboa, Portugal

Description

Structure_threader is a program to parallelize multiple runs of the software structure and fastStructure on multi-core computers. Our approach was benchmarked across multiple systems and displayed great speed improvements, of up to 9x faster, depending on the system and number of threads used, relative to the standard, single threaded implementation.

Notes

Available at https://github.com/StuntsPT/Structure_threader.

Files

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