scDALI: Modelling allelic heterogeneity in single cells reveals context-specific genetic regulation

Source code and resources for analyses presented in our paper "scDALI: Modelling allelic heterogeneity in single cells reveals context-specific genetic regulation" (https://www.biorxiv.org/content/10.1101/2021.03.19.436142v1).

Cached anndata files (https://github.com/theislab/anndata) with raw counts (total & allelic) for sci-ATAC-seq of Drosophila Melanogaster F1 embryos are contained in: scdali_analyses/drosophila_f1/data/.cache

Current versions of scDALI can be found under: https://github.com/PMBio/scdali