Published June 30, 2016
| Version v1.6.0
Software
Open
viral-ngs: v1.6.0
- 1. Broad Institute
- 2. Broad Institute of MIT and Harvard
- 3. MIT
- 4. DNAnexus
Description
New:
- added common_barcodes command to illumina.py to write a report of the barcodes present in a run, sorted in descending order by count
- added --commonBarcodes to illumina_demux command to write a common barcodes file as part of the demultiplexing process
Fixes:
- more robust handling of sample sheet data
- Snakemake pipeline fixes related to how Snakemake handles parameters in newer versions
- update trimmomatic to 0.36
- trimmomatic install fix
- various fixes in interhost.rules (Snakemake pipeline)
Files
viral-ngs-v1.6.0.zip
Files
(45.8 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:a8fb9deece7d0b85ba2c2692231e3e3d
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45.8 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/broadinstitute/viral-ngs/tree/v1.6.0 (URL)