mcbrnet: metacommunity simulation in a branching network
Description
Overview
The package mcbrnet
is composed of two main functions: brnet()
and mcsim()
.
-
brnet
: Functionbrnet()
generates a random branching network with the specified number of patches and probability of branching. The function returns adjacency and distance matrices, hypothetical environmental values at each patch, and the number of patches upstream (akin to the watershed area in river networks). The output may be used in functionmcsim()
to simulate metacommunity dynamics in a branching network. -
mcsim
: Functionmcsim()
simulates metacommunity dynamics. By default, it produces a square-shaped landscape with randomly distributed habitat patches (x- and y-coordinates are drawn from a uniform distribution). If a distance matrix is given, the function simulates metacommunity dynamics in the specified landscape. Functionmcsim()
follows a general framework proposed by Thompson et al. (2020) with some modifications.
Change log
- version 1.1.0
- added disturbance arguments to
brnet()
- added function
adjtodist()
- added disturbance arguments to
- version 1.0.0: initial release
References
Thompson et al. (2020) A process-based metacommunity framework linking local and regional scale community ecology. Ecology Letters 23: 1314-1329.
Files
aterui/mcbrnet-1.1.0.zip
Files
(296.6 kB)
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Additional details
Related works
- Is supplement to
- https://github.com/aterui/mcbrnet/tree/1.1.0 (URL)