Published November 1, 2021 | Version 1.0
Dataset Open

Alignment files for coverage benchmarks: Illumina and Nanopore sequencing datasets

  • 1. Quadram Institute Bioscience

Description

  • cpara-illumina-noseq.bam and cpara-ont-noseq.bam: BAM files produced aligning the raw reads produced respectively by Illumina NextSeq and ONT Nanopore sequencing of an isolate of C. parapsilosis to evaluate the coverage calculations using real datasets.*
  • HG00258.bam: Exome sequencing from the 1000 Genomes Project (Clarke et al 2016 https://doi.org/10.1093/nar/gkw829).
  • panel_01.bam: targeted sequencing of a Human gene panel of 16 genes.*

* Sequences and qualities have been removed

Files

Files (12.5 GB)

Name Size Download all
md5:830b5d827005979df63a490a17617e3b
257.6 MB Download
md5:a6660d1a9fbf0ceddc91b0de62a5c88c
20.7 MB Download
md5:a2403411d975d36c49c4f5c24a5b75ea
12.2 GB Download
md5:670bbb5f2e96965e8b1d05a8cef3bb04
10.9 MB Download

Additional details

Funding

Quadram Institute Bioscience UKRI Innovation Fellowships: BBSRC Flexible Talent Mobility Accounts BB/R506552/1
UK Research and Innovation
CLIMB-BIG-DATA: A Cloud Infrastructure for Big-Data Microbial Bioinformatics MR/T030062/1
UK Research and Innovation