Published February 13, 2022 | Version v1
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Genomic data support the taxonomic validity of Middle American livebearers Poeciliopsis gracilis and Poeciliopsis pleurospilus (Cyprinodontiformes: Poeciliidae)

  • 1. University of Oklahoma
  • 2. Field Museum of Natural History
  • 3. Southeastern Louisiana University

Description

Poeciliopsis (Cyprinodontiformes: Poeciliidae) is a genus comprised of 25 species of freshwater fishes. Several well-known taxonomic uncertainties exist within the genus, especially in relation to the taxonomic status of Poeciliopsis pleurospilus and P. gracilis. However, to date, no studies have been conducted to specifically address the taxonomic status of these two species. The goal of this study was to examine the taxonomic validity of P. pleurospilus and P. gracilis using genomic data (ddRADseq) in phylogenetic, population genetic, and species delimitation frameworks. Multiple analyses support the recognition of both taxa as distinct species and also permits us to revise their respective distributions. A species delimitation analysis indicates that P. pleurospilus and P. gracilis are distinct species from one another, each of which consists of two distinct lineages that are geographically structured. Phylogenetic and population genetic analyses demonstrate clear evidence that individuals of P. gracilis are distributed north and west of the Isthmus of Tehuantepec in both Pacific and Atlantic river systems in Mexico, whereas individuals of P. pleurospilus are distributed in both Atlantic and Pacific river systems south and east of the Isthmus of Tehuantepec, from southern Mexico to Honduras.

Notes

S1 Appendix. Laboratory Protocol.

S1 Fig. a-score optimization – spline interpolation.

S1 Table. Sampling localities of ingroup individuals.

S2 Appendix. ipyrad summary statistics.

S2 Table. Sampling localities of outgroup individuals.

S3 Appendix. Bioinformatic workflow.

S3 Table. Barcodes and batch information.

S4 Appendix. Treefile of phylogenetic inference.

S4 Table. Parameters used for assembly of concatenated dataset.

ingroup.recode - VCF file containing alignment of ingroup individuals. 

oneout.recode - VCF file containing alignment of ingroup individuals plus one outgroup specimen (Brachyrhaphis rhabdophora). 

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Additional details

Related works

Is source of
10.5061/dryad.mkkwh711m (DOI)