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Published September 15, 2021 | Version 1
Dataset Open

JASPAR TFBS LOLA databases - Part 1

Creators

  • 1. Center for Molecular Medicine Norway
  • 2. Laboratoire Physiologie Cellulaire et Végétale, Univ. Grenoble Alpes
  • 3. Stanford Cancer Institute
  • 4. Department of Plant Biotechnology and Bioinformatics, Ghent University
  • 5. Centre for Molecular Medicine and Therapeutics, Department of Medical Genetics, BC Children's Hospital Research Institute, University of British Columbia
  • 6. Aix Marseille Univ, INSERM, TAGC, Marseille
  • 7. UCSC Genome Browser, University of California Santa Cruz
  • 8. Institute of Clinical Sciences, Faculty of Medicine, Imperial College London
  • 9. The Bioinformatics Centre, Department of Biology & Biotech Research and Innovation Centre, University of Copenhagen
  • 10. Bioinformatics Institute Ghent, Ghent University

Description

This repository contains the first part of the JASPAR 2022 LOLA databases used by the JASPAR TFBS enrichment tool. For each organism, we provide the LOLA databases for all JASPAR 2022 TFBS sets as compressed directories containing a set of .RDS R objects. Databases are organised by genome assembly.

Due to file sizes, we had to split the repository into two different parts. Part 2 of the repository containing the databases for human can be found here.

Files

Files (41.4 GB)

Name Size Download all
md5:741f2418b234132f24692b10298fd601
915.4 MB Download
md5:a57d1dd46cbfe277c811e1d3057fb864
98.5 MB Download
md5:7ff950523aba395266eeb117d50026e9
98.5 MB Download
md5:5fec35cefceea3aa7f3e6c6e9f0714ac
83.6 MB Download
md5:d420261be9f01222294c7f177cfcd3b1
15.2 GB Download
md5:e286a4906506741dbd0a1c35f51d4d17
578.5 MB Download
md5:371271493e5e4c5ccbb3b109c30b4069
24.4 GB Download
md5:2a33d9a1200b56bc4789e9c0a77bf8b8
32.2 MB Download