UPDATE: Zenodo migration postponed to Oct 13 from 06:00-08:00 UTC. Read the announcement.

Software Open Access

sbmlsim: SBML simulation made easy

König, Matthias

sbmlsim is a collection of python utilities to simplify simulations with SBML models implemented on top of roadrunner and other libraries with source code available from https://github.com/matthiaskoenig/sbmlsim

Features include among others

  • simulation experiments
  • simulation reports
  • parameter fitting

The documentation is available on https://sbmlsim.readthedocs.io

If you have any questions or issues please open an issue


Matthias König is supported by the Federal Ministry of Education and Research (BMBF, Germany) within the research network Systems Medicine of the Liver (LiSyM, grant number 031L0054) and by the German Research Foundation (DFG) within the Research Unit Programme FOR 5151 QuaLiPerF (Quantifying Liver Perfusion-Function Relationship in Complex Resection - A Systems Medicine Approach)" by grant number 436883643. Matthias König has received funds from the EOSCsecretariat.eu which has received funding from the European Union's Horizon Programme call H2020-INFRAEOSC-05-2018-2019, grant Agreement number 831644.

Files (12.1 MB)
Name Size
12.1 MB Download
All versions This version
Views 921281
Downloads 549
Data volume 338.7 MB108.8 MB
Unique views 683215
Unique downloads 399


Cite as