Published August 31, 2021 | Version v1
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Boeremia parva sp. nov., a novel species of the family Didymellaceae isolated from soil

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Das, Kallol, Ten, Leonid N., Ban, Jae-Ho, Lee, Seung-Yeol, Jung, Hee-Young (2021): Boeremia parva sp. nov., a novel species of the family Didymellaceae isolated from soil. Phytotaxa 518 (1): 25-35, DOI: 10.11646/phytotaxa.518.1.3

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urn:lsid:plazi.org:pub:CF21FF94FFC2FFD3FFC0FFFC8747B97C
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References

  • Abeln, E.C.A., Stax, A.M., de Gruyter, J. & Van Der Aa, H.A. (2002) Genetic differentiation of Phoma exigua varieties by means of AFLP fingerprints. Mycological Research 106: 419-427. https://doi.org/10.1017/S0953756202005804
  • Aveskamp, M.M., Woudenberg, J.H.C., de Gruyter, J., Turco, E., Groenewald, J.Z. & Crous, P.W. (2009) Development of taxon-specific sequence characterized amplified region (SCAR) markers based on actin sequences and DNA amplification fingerprinting (DAF): a case study in the Phoma exigua species complex. Molecular Plant Pathology 10 (3): 403-414. https://doi.org/10.1111/J.1364-3703.2009.00540.X
  • Aveskamp, M.M., de Gruyter, J., Woudenberg, J.H.C., Verkley, G.J.M. & Crous, P.W. (2010) Highlights of the Didymellaceae:A polyphasic approach to characterise Phoma and related pleosporalean genera. Studies in Mycology 65: 1-60. https://doi.org/10.3114/sim.2010.65.01
  • Berner, D., Cavin, C., Woudenberg, J.H.C., Tunali, B., Buyuk, O. & Kansu, B. (2015) Assessment of Boeremia exigua var. rhapontica, as a biological control agent of Russian knapweed (Rhaponticum repens). Biological Control 81: 65-75. https://doi.org/10.1016/j.biocontrol.2014.11.009
  • Betina, V. (1992) Biological effects of the antibiotic brefeldin A (decumbin, cyanein, ascotoxin, synergisidin): a retrospective. Folia Microbiolica 37 (1): 3-11. https://doi.org/10.1007/BF02814572
  • Boerema, G.H. (1997) Contributions towards a monograph of Phoma (Coelomycetes) - V. Subdivision of the genus in sections. Mycotaxon 64: 321-333.
  • Boerema, G.H., de Gruyter, J., Noordeloos, M.E. & Hamers, M.E.C. (2004) Phoma identification manual. Differentiation of specific and infra-specific taxa in culture. CABI Publishing, Wallingford, 470 pp.
  • Bottalico, A., Capasso, R., Evidente, A. & Vurro, M. (1994) Process for the production and purification of cytochalasin B from Phoma exigua var. heteromorpha. Applied Biochemistry and Biotechnology 48 (1): 33-36. https://doi.org/10.1007/BF02825357
  • Carbone, I. & Kohn, L.M. (1999) A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologia 91: 553-556. https://doi.org/10.1080/00275514.1999.12061051
  • Cimmino, A., Andolfi, A., Berestetskiy, A. & Evidente, A. (2008) Production of phytotoxins by Phoma exigua var. exigua, a potential mycoherbicide against perennial thistles. Journal of Agriculture Food Chemistry 56 (15): 6304-6309. https://doi.org/10.1021/jf8004178
  • Che, Y., Gloer, J.B. & Wicklow, D.T. (2002) Phomadecalins A-D and phomapentenone A: new bioactive metabolites from Phoma sp. NRRL 25697, a fungal colonist of Hypoxylon stromata. Journal of Natural Products 65 (3): 399-402. https://doi.org/10.1021/np010519o
  • Chen, Q., Zhang, K., Zhang, G.Z. & Cai, L. (2015) A polyphasic approach to characterize two novel species of Phoma (Didymellaceae) from China. Phytotaxa 197 (4): 267-281. https://doi.org/10.11646/phytotaxa.197.4.4
  • Chen, Q., Hou, L.W., Duan, W.J. Crous, P.W. & Cai, L. (2017) Didymellaceae revised. Studies in Mycology 87: 105-156. http://dx.doi.org/10.1016/j.simyco.2017.06.002
  • Damm, U., Cannon, P.F., Woudenberg, J.H.C., Johnston, P.R., Weir, B.S., Tan, Y.P., Shivas, R.G. & Crous, P.W. (2012) The Colletotrichum boninense species complex. Studies in Mycology 73 (1): 1-36. http://dx.doi.org/10.3114/sim0002
  • de Gruyter, J. & Scheer, P. (1998) Taxonomy and pathogenicity of Phoma exigua var. populi var. nov. causing necrotic bark lesions on poplars. Journal of Phytopathology 146 (8-9): 411-415. https://doi.org/10.1111/j.1439-0434.1998.tb04773.x
  • de Gruyter, J., Boerema, G.H. && Van Der Aa, H.A. (2002) Contributions towards a monograph of Phoma (Coelomycetes) VI-2. Section of Phyllostictoides: Outline of its taxa. Persoonia - Molecular Phylogeny and Evolution of Fungi 18 (1): 1-53.
  • de Gruyter, J., Aveskamp, M.M., Woudenberg, J.H.C., Verkley, G.J.M., Groenewald, J.Z. & Crous PW. (2009) Molecular phylogeny of Phoma and allied anamorph genera: Towards a reclassification of the Phoma complex. Mycological Research 113: 508-519. https://doi.org/10.1016/j.mycres.2009.01.002
  • Felsenstein, J. (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. Molecular Biology and Evolution 17: 368-376. https://doi.org/10.1007/BF01734359
  • Fitch, W.M. (1971) Toward defining the course of evolution: minimum change for a specific tree topology. Systematic Zoology 20 (4): 406-416. https://doi.org/10.2307/2412116
  • Glass, N.L. & Donaldson, G.C. (1995) Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes. Applied and Environmental Microbiology 61 (4): 1323-1330. http://dx.doi.org/10.1128/aem.61.4.1323-1330.1995
  • Gorny, A.M., Kikkert, J.R., Dunn, A.R., Dillard, H.R., Smart, C.D. & Pethybridge, S.J. (2015) Tan spot of lima bean caused by Boeremia exigua var. exigua in New York State, USA. Canadian Journal of Plant Pathology 37 (4): 523-528. https://doi.org/10.1080/07060661.2015.1105873
  • Jayasiri, S.C., Hyde, K.D., Jones, E.B., Jeewon, R., Ariyawansa, H.A., Bhat, J.D., Camporesi, E. & Kang, J.C. (2017) Taxonomy and multigene phylogenetic evaluation of novel species in Boeremia and Epicoccum with new records of Ascochyta and Didymella (Didymellaceae). Mycosphere 8 (8): 1080-1101. https://doi.org/10.5943/mycosphere/8/8/9
  • Jayawardena, R.S., Hyde, K.D., Jeewon, R., Ghobad-Nejhad, M., Wanasinghe, D.N., Liu, N., Phillips, A.J.L., Oliveira-Filho, J.R.C., da Silva, G.A. & Gibertoni, T.B. (2019) One stop shop II: taxonomic update with molecular phylogeny for important phytopathogenic genera: 26-50 (2019). Fungal Diversity 94: 41-129. https://doi.org/10.1007/s13225-019-00418-5
  • Kimura, M. (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Molecular Biology and Evolution 16 (2): 111-120. https://doi.org/10.1007/bf01731581
  • Koike, S.T., Subbarao, K.V., Verkley, G.J., Fogle, D. & OʹNeil, T.M. (2006) Phoma basal rot of Romaine lettuce in California caused by Phoma exigua: Occurrence, characterization, and control. Plant Disease 90 (10): 1268-1275. https://doi.org/10.1094/PD-90-1268
  • Kowalski, T., Kraj, W., Bednarz, B. & Rossa, R. (2019) The association of Boeremia lilacis with necrotic lesions on shoots and leaf petioles and its pathogenicity towards Fraxinus excelsior. European Journal of Plant Pathology 154 (4): 961-974. https://doi.org/10.1007/s10658-019-01715-0
  • Kumar, S., Stecher, G. & Tamura, K. (2016) MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Molecular Biology and Evolution 33 (7): 1870-1874. https://doi.org/10.1093/molbev/msw054
  • Larkin, M.A., Blackshields, G., Brown, N.P., Chenna, R., McGettigan, P.A., McWilliam, H., Valentin, F., Wallace, I.M., Wilm, A., Lopez, R., Thompson, J.D., Gibson, T.J. & Higgins, D.G. (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23 (21): 2947-2948. https://doi.org/10.1093/bioinformatics/btm404
  • Marin-Felix, Y., Groenewald, J.Z., Cai, L. Chen, Q., Marincowitz, S., Barnes, I., Bensch, K., Braun, U., Camporesi, E., Damm, U., de Beer, Z.W., Dissanayake, A., Edwards, J., Giraldo, A., Hernandez-Restrepo, M., Hyde, K.D., Jayawardena, R.S., Lombard, L., Luangsa-ard, J., McTaggart, A.R., Rossman, A.Y., Sandoval-Denis, M., Shen, M., Shivas, R.G., Tan, Y.P., van der Linde, E.J., Wingfield, M.J., Wood, A.R., Zhang, J.Q., Zhang, Y. & Crous, P.W. (2017) Genera of phytopathogenic fungi: GOPHY 1. Studies in Mycology 86: 99-216. https://doi.org/10.1016/j.simyco.2017.04.002
  • Monte, E., Bridge, P.D. & Sutton, B.C. (1991) An integrated approach to Phoma systematics. Mycopathologia 115 (2): 89-103. https://doi.org/10.1007/BF00436797
  • O'Donnell, K. & Cigelnik, E. (1997) Two divergent intragenomic rDNA ITS2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous. Molecular Phylogenetics and Evolution 7 (1): 103-116. https://doi.org/10.1006/mpev.1996.0376
  • O'Donnell, K., Kistler, H.C., Cigelnik, E. & Ploetz, R.C. (1998) Multiple evolutionary origins of the fungus causing Panama disease of banana: concordant evidence from nuclear and mitochondrial gene genealogies. Proceedings of the National Academy of Sciences of the United States of America 95 (5): 2044-2049. https://doi.org/10.1073/pnas.95.5.2044
  • Park, S., Ten, L., Lee, S.Y., Back, C.G., Lee, J.J., Lee, H.B. & Jung, H.Y. (2017) New recorded species in three genera of the Sordariomycetes in Korea. Mycobiology 45 (2): 64-72. https://doi.org/10.5941/MYCO.2017.45.2.64
  • Rai, M., Deshmukh, P., Gade, A., Ingle, A., Gyorgy, J. Kovics, G.J. & Irinyi, L. (2009) Phoma Saccardo: distribution, secondary metabolite production and biotechnological applications. Critical Reviews in Microbiology 35 (3): 182-196. https://doi.org/10.1080/10408410902975992
  • Rai, M., Gade, A., Zimowska, B., Ingle, A.P. & Ingle, P. (2018) Marine-derived phoma-the gold mine of bioactive compounds. Applied Microbiology and Biotechnology 102 (21): 9053-9066. https://doi.org/10.1007/s00253-018-9329-2
  • Saitou, N. & Nei, M. (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4 (4): 406-425. https://doi.org/10.1093/oxfordjournals.molbev.a040454
  • Seifert, K.A. (2009) Progress towards DNA barcoding of fungi. Molecular Ecology Resources 9 (Suppl. 1): 83-89. https://doi.org/10.1111/j.1755-0998.2009.02635.x
  • Singh, S.B., Zink, D.L., Goetz, M.A., Dombrowski, A.W., Polishook, J.D. & Hazuda, D.J. (1998) Equisetin and a novel opposite stereochemical homolog Phomasetin, two fungal metabolites as inhibitors of HIV-1 integrase. Tetrahedron 39 (16): 2243-2246. https://doi.org/10.1016/S0040-4039(98)00269-X
  • Stewart, R.B. (1957) Leaf blight and stem dieback of coffee caused by an undescribed species of Ascochyta. Mycologia 49 (3): 430-433. https://doi.org/10.1080/00275514.1957.12024659
  • Wang, L.W., Xu, B.G., Wang, J.Y., Su, Z.Z., Lin, F.C., Zhang, C.L. & Kubicek, C.P. (2012) Bioactive metabolites from Phoma species, an endophytic fungus from the Chinese medicinal plant Arisaema erubescens. Applied Microbiology and Biotechnology 93 (3): 1231-1239. https://doi.org/10.1007/s00253-011-3472-3
  • White, T.J., Bruns, T., Lee, S. & Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis, M.A., Gelfand, D.H., Sninsky, J.J. & White, T.J. (Eds.) PCR protocols: a guide to methods and applications. Academic Press, San Diego (CA), pp. 315-322. https://doi.org/10.1016/B978-0-12-372180-8.50042-1