Biodiversity Literature Repository
Published February 8, 2011 | Version v1
Journal article Restricted

Nucleotide sequence data confirm diagnosis and local endemism of variable morphospecies of Andean astroblepid catfishes (Siluriformes: Astroblepidae)

Creators

Description

Schaefer, Scott A., Chakrabarty, Prosanta, Geneva, Anthony J., Sabaj Pérez, Mark H. (2011): Nucleotide sequence data confirm diagnosis and local endemism of variable morphospecies of Andean astroblepid catfishes (Siluriformes: Astroblepidae). Zoological Journal of the Linnean Society 162 (1): 90-102, DOI: 10.1111/j.1096-3642.2010.00673.x, URL: http://dx.doi.org/10.1111/j.1096-3642.2010.00673.x

Files

Restricted

The record is publicly accessible, but files are restricted to users with access.

Linked records

Additional details

Identifiers

LSID
urn:lsid:plazi.org:pub:6713FFC4FF89FFF1C112FF825759F509

Related works

Has part
Figure: 10.5281/zenodo.5440159 (DOI)
Figure: 10.5281/zenodo.5440161 (DOI)
Figure: 10.5281/zenodo.5440163 (DOI)

References

  • Aquino AE, Schaefer SA. 2002. Revision of Oxyropsis Eigenmann and Eigenmann, 1889 (Siluriformes, Loricariidae). Copeia 2002: 374-390.
  • Chakrabarty P. 2006. Systematics and historical biogeography of Greater Antillean Cichlidae. Molecular Phylogenetics and Evolution 39: 619-627.
  • DeSalle R, Egan MG, Siddal M. 2005. The unholy trinity: taxonomy, species delimitation, and DNA barcoding. Philosophical Transactions of the Royal Society B 360: 1905- 1916.
  • Eernisse DJ, Kluge AG. 1993. Taxonomic congruence versus total evidence, and amniote phylogeny inferred from fossils, molecules and morphology. Molecular Biology and Evolution 10: 1170-1195.
  • Farias IP, Orti G, Sampaio I, Schneider H, Meyer A. 1999. Mitochondrial DNA phylogeny of the family Cichlidae: Monophyly and fast molecular evolution of the Neotropical assemblage. Journal of Molecular Evolution 48: 703- 711.
  • Ferraris CJ Jr. 2003. Subfamily Loricariinae (armored catfishes). In: Reis RE, Kullander SO, Ferraris CJ Jr, eds. Checklist of the freshwater fishes of South and Central America. Porto Alegre: Edipucrs, 330-350.
  • Ferraris CJ Jr. 2007. Checklist of catfishes, recent and fossil (Osteichthyes: Siluriformes), and catalogue of siluriform primary types. Zootaxa 1418: 1-628.
  • Fisch-Muller S. 2003. Subfamily Ancistrinae (armored catfishes). In: Reis RE, Kullander SO, Ferraris CJ Jr, eds. Checklist of the freshwater fishes of South and Central America. Porto Alegre: Edipucrs, 373-400.
  • Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R. 1994. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology 3: 294- 299.
  • Frost DR, Rodriguez MT, Grant T, Titus TA. 2001. Phylogenetics of the lizard genus Tropidurus (Squamata: Tropiduridae: Tropidurinae): direct optimization, descriptive efficiency, and sensitivity analysis of congruence between molecular data and morphology. Molecular Phylogenetics and Evolution 21: 352-371.
  • Garzione CN, Hoke GD, Libarkin JC, Withers S, Man- Fadden B, Eiler J, Ghosh P, Mulch A. 2008. Rise of the Andes. Science 320: 1304-1307.
  • Goloboff PA, Farris JS, Nixon KC. 2008. TNT, a free program for phylogenetic analysis. Cladistics 24: 774-786.
  • Gregory-Wodzicki KM. 2000. Uplift history of the Central and Northern Andes: a review. Geological Society of America Bulletin 112: 1091-1105.
  • Hall TA. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/ NT. Nucleic Acids Symposium Series 41: 95-98.
  • Hardman M, Page LM. 2003. Phylogenetic relationships among bullhead catfishes of the genus Ameiurus (Siluriformes: Ictaluridae). Copeia 2003: 20-33.
  • Hebert PDN, Cywinska A, Ball SL, deWaard JR. 2003. Biological identification through DNA barcodes. Proceedings of the Royal Society of London B 270: 313-321.
  • Hudson RR, Coyne JA. 2002. Mathematical consequences of the genealogical species concept. Evolution 56: 1557-1565.
  • Hughes C, Eastwood R. 2006. Island radiation on a continental scale: exceptional rates of plant diversification after uplift of the Andes. Proceedings of the National Academy of Sciences, USA 103: 10334-10339.
  • Jarvis A, Reuter HI, Nelson A, Guevara E. 2006. Hole-filled seamless SRTM data V3. International Centre for Tropical Agriculture (CIAT). Available at http:// srtm.csi.cgiar.org
  • Kessler M. 2002. The elevational gradient of Andean plant endemism: varying influences of taxon-specific traits and topography at different taxonomic levels. Journal of Biogeography 29: 1159-1165.
  • Killeen TJ, Douglas M, Consiglio T, Jorgensen PM, Mejia J. 2007. Dry spots and wet spots in the Andean hotspot. Journal of Biogeography 34: 1357-1373.
  • Kocher TD, Thomas WK, Meyer A, Edwards SV, Paabo S, Villablanca FX, Wilson AC. 1989. Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers. Proceedings of the National Academy of Sciences, USA 86: 6196-6200.
  • Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG. 2007. Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947-2948.
  • Lopez RP. 2003. Phytogeographical relations of the Andean dry valleys of Bolivia. Journal of Biogeography 30: 1659- 1668.
  • Mayden RL. 1997. A hierarchy of species concepts: the denouement in the saga of the species problem. In: Claridge MF, Dawah HA, Wilson MR, eds. Species: the units of biodiversity. London: Chapman & Hall, 381-424.
  • Miya M, Takeshima H, Endo H, Ishiguro NB, Inoue JG, Mukai T, Satah TP, Yamaguchi M, Kawaguchi A, Mabuchi K, Shirai SM, Nishida M. 2003. Major patterns of higher teleostean phylogenies: a new perspective based on 100 complete mitochondrial DNA sequences. Molecular Phylogenetics and Evolution 26: 121-138.
  • Nixon KC, Carpenter JM. 1996. On simultaneous analysis. Cladistics 12: 221-241.
  • Nixon KC, Wheeler QD. 1990. An amplification of the phylogenetic species concept. Cladistics 6: 211-223.
  • Palumbi SR. 1996. Nucleic acids II the polymerase chain reaction. In: Hillis DM, Moritz C, Mable BK, eds. Molecular systematics, 2nd edn. Sunderland, MA: Sinauer, 205- 247.
  • Pons J, Barraclough TG, Gomez-Zurita J, Cardoso A, Duran DP, Hazell S, Kamoun S, Sumlin WD, Vogler A. 2006. Sequence-based species delimitation for the DNA taxonomy of undescribed insects. Systematic Biology 55: 595-609.
  • de Queiroz K. 2007. Species concepts and species delimitation. Systematic Biology 56: 879-886.
  • Regan CT. 1904. A monograph of the fishes of the family Loricariidae. Transactions of the Zoological Society of London 17: 191-350.
  • Rieppel O. 2009. Species monophyly. Journal of Zoological Systematics and Evolutionary Research 48: 1-8.
  • Rosen DE. 1979. Fishes from the upland and intermontane basin of Guatemala: revisionary studies and comparative biogeography. Bulletin of the American Museum of Natural History 162: 267-376.
  • Sarmiento G. 1975. The dry plant formations of South America and their floristic connections. Journal of Biogeography 2: 233-251.
  • Schaefer SA. 1997. The Neotropical cascudinhos: systematics and biogeography of the Otocinclus catfishes (Siluriformes: Loricariidae). Proceedings of the Academy of Natural Sciences of Philadelphia 148: 1-120.
  • Schaefer SA. 2003. Family Astroblepidae. In: Reis RE, Kullander SO, Ferraris CJ Jr, eds. Checklist of the Freshwater Fishes of South and Central America. Porto Alegre: Edipucrs, 312-317.
  • Schaefer SA. 2011. Chapter 16. The Andes: Riding the tectonic uplift. In: Albert JS, Reis RE, eds. Historical biogeography of Neotropical freshwater fishes. Berkeley, CA: University of California Press, 259-278. in press.
  • Schaefer SA, Stewart DJ. 1993. Systematics of the Panaque dentex species group (Siluriformes: Loricariidae), woodeating armored catfishes from tropical South America. Ichthyological Exploration of Freshwaters 4: 309-342.
  • Stamatakis A, Hoover P, Rougemont J. 2008. A rapid bootstrap algorithm for the RAxML web-servers. Systematic Biology 75: 758-771.
  • Sullivan JP, Lundberg JG, Hardman M. 2006. A phylogenetic analysis of the major groups of catfishes (Teleostei: Siluriformes) using rag1 and rag2 nuclear gene sequences. Molecular Phylogenetics and Evolution 41: 636-662.
  • Weber C. 2003. Subfamily Hypostominae (armored catfishes). In: Reis RE, Kullander SO, Ferraris CJ Jr, eds. Checklist of the freshwater fishes of South and Central America. Porto Alegre: Edipucrs, 351-372.
  • Wheeler QD, Platnick NI. 2000. A critique from the Wheeler and Platnick phylogenetic species concept perspective: problems with alternative concepts of species. In: Wheeler QD, Meier R, eds. Species concepts and phylogenetic theory. A debate. New York: Columbia University Press, 133-145.