Published January 15, 2021
| Version v1
Journal article
Restricted
Species delimitation of Hymenasplenium obliquissimum group (Aspleniaceae) in southwestern China
- 1. College of Life Sciences and Environment, Hengyang Normal University, Hengyang 421008, Hunan, China & Hunan Key Laboratory for Conservation and Utilization of Biological Resources in the Nanyue Mountainous Region
- 2. College of Biological and Chemical Engineering, Puer University, Puer 665000, Yunnan, China & 78191902@qq.com; https://orcid.org/0000-0001-5433-3722
- 3. Institute of Ecology and Geobotany, Yunnan University, Kunming 650091, Yunnan, China & shuganglu@163.com; https://orcid.org/0000-0002-2191-8078
- 4. College of Life Sciences and Environment, Hengyang Normal University, Hengyang 421008, Hunan, China & Hunan Key Laboratory for Conservation and Utilization of Biological Resources in the Nanyue Mountainous Region & changyf2018@126.com; https://orcid.org/0000-0001-5877-3370
Description
Zhang, Guo-Cheng, Hong, Hua-Feng, Chen, Ge-Hong, Lu, Shu-Gang, Chang, Yan-Fen (2021): Species delimitation of Hymenasplenium obliquissimum group (Aspleniaceae) in southwestern China. Phytotaxa 480 (1): 29-44, DOI: 10.11646/phytotaxa.480.1.3, URL: http://dx.doi.org/10.11646/phytotaxa.480.1.3
Files
Linked records
Additional details
Identifiers
- LSID
- urn:lsid:plazi.org:pub:FFF4AD6EC779FFD1905CFFC8FF86FF83
References
- Akaike, H. (1974) A new look at the statistical model identification. IEEE Transactions on Automatic Control 19: 716-723. https://doi.org/10.1109/TAC.1974.1100705
- Barrington, D.S. & Paris, C.A. (1986) Systematic inferences from spore and stomata size in the ferns. American Fern Journal 76: 149- 159. https://doi.org/10.2307/1547723
- Blume, C.L. (1828) Enumeratio Plantarum Javae fasc. pp. 181-182.
- Boykin, L.M., Armstrong, K.F., Kubatko, L. & de Barro, P. (2012) Species delimitation and global biosecurity. Evolutionary Bioinformatics 8: 1-37. https://doi.org/10.4137/EBO.S8532
- Brysting, A.K., Oxelman, B., Huber, K.T., Moulton, V. & Brochmann, C. (2007) Untangling complex histories of genome mergings in high polyploids. Systematic Biology 56: 467-476. https://doi.org/10.1080/10635150701424553
- Chang,Y.F., Ebihara,A., Lu, S.G., Liu, H.M.& Schneider, H. (2018) Integrated taxonomy of the Asplenium normale complex (Aspleniaceae) in China and adjacent areas. Journal of plant research 131 (4): 1-15. https://doi.org/10.1007/s10265-018-1032-y
- Chang, Y.F., Li, J., Lu, S.G. & Schneider, H. (2013) The species diversity and reticulate evolution in the Asplenium normale complex (Aspleniaceae) in China and adjacent areas. Taxon 62: 673-687. https://doi.org/10.12705/624.6
- Chang, Y.F., Hori, K., Murakami, N., Cao, L.M., Lu, S.G. & Schneider, H. (2018) Validation of Hymenasplenium laterepens (Aspleniaceae): Evidence from morphology and molecular analyses. Phytotaxa 374: 277-290. https://doi.org/10.11646/phytotaxa.374.4.1
- Cheng, X. & Murakami, N. (1998) Cytotaxonomic study of genus Hymenasplenium (Aspleniaceae) in Xishuangbanna, Southwestern China. Journal of Plant Research 111 (4): 495-500. https://doi.org/10.1007/BF02507784
- Ching, R.C. (1965) Asplenium unilaterale Lam. and its confused species in China. Acta Phytotaxonomica Sinica 10 (3): 183-191.
- Copeland, E.B. (1908) New Philippe ferns, II. Philippine Journal of Science 3: 34.
- Doyle, J.J. & Doyle, J.L. (1987) A rapid DNA isolation procedure from small quantities of fresh leaf tissues. Phytochemistry Bulletin 19: 11-15.
- Dyer, R.J., Savolainen, V. & Schneider, H (2012) Apomixis and reticulate evolution in the Asplenium monanthes fern complex. Annals of Botany 110: 1515-1529. https://doi.org/10.1093/aob/mcs202
- Ebihara, A., Nitta, J.H. & Ito, M. (2010) Molecular species identification with rich floristic sampling: DNA barcoding the pteridophyte flora of Japan. PloS ONE 5: e15136. https://doi.org/10.1371/journal.pone.0015136
- Grusz, A.L. (2016) A current perspective on apomixis in ferns. Journal of Systematics and Evolution 54: 656-665. https://doi.org/10.1111/jse.12228
- Guindon, S., Dufayard, J.F., Lefort, V., Anisimova, M., Hordijk, W. & Gascuel, O. (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Systematic Biology 59: 307-321. https://doi.org/10.1093/sysbio/syq010
- Hall, T. (2004) BioEdit 7.0.1. Department of Microbiology, North Carolina State University. [http://www.mbio.ncsu.edu/BioEdit/bioedit. html]
- Hayata, B. (1914) Icones plantarum formosanarum nec non et contributiones ad floram formosanam, vol. 4. Government of Formosa, Taihoku. pp. 1-264.
- Hayata, B. (1927) On the systematic importance of the stelar system in the Filicales, I. Botanical Magazine, Tokyo 41: 697-718. https://doi.org/10.15281/jplantres1887.41.697
- Huber, K., Oxelman, B., Lott, M. & Moulton, V. (2006) Reconstructing the evolutionary history of polyploids from multi-labelled trees. Molecular Biology and Evolution 23: 1784-1791. https://doi.org/10.1093/molbev/msl045
- Huelsenbeck, J.P. & Ronquist, F. (2001) MrBayes: Bayesian inference of phylogeny. Bioinformatics 17: 754-755. https://doi.org/10.1093/bioinformatics/17.8.754
- Lamarck, J.B.A.P. (1786) Encyclopedie Methodique, Botanique, vol. 2. Panckoucke, Paris; Plomteux, Liege, 305 pp.
- Lin, Y.X. & Viane, R. (2013) Aspleniaceae. In: Wu, Z.Y., Raven, P.H. & Hong, D.Y. (Eds.) Flora of China, vols. 2-3. Science Press, Beijing & Missouri Botanical Garden Press, St. Louis, pp. 267-316.
- Lindsay, S., Middleton, D.G., Boonkerd, T. & Suddee, S. (2009) Towards a stable nomenclature for Thai ferns. Thai Forest Bulletin (Botany) 37: 64-106.
- Linnaeus, C. (1753) Species plantarum. Salvius, Stockholm, 1078 pp.
- Lott, M., Spillner,A., Huber, K.T. & Moulton, V. (2009) PADRE:A package for analyzing and displaying reticulate evolution. Bioinformatics 25: 1199-1200. https://doi.org/10.1093/bioinformatics/btp133
- Lovis, J.D. (1978) Evolutionary patterns and processes in ferns. Advances in Botanical Research 4: 229-440. https://doi.org/10.1016/S0065-2296(08)60371-7
- Masters, D.C., Fan, V. & Ross, H.A. (2011) Species delimitation-a geneious plugin for the exploration of species boundaries. Molecular Ecology Resources 11: 154-157. https://doi.org/10.1111/j.1755-0998.2010.02896.x
- Mettenius, G.H. (1859) Abhandlungen herausgegeben von der Senckenbergischen Naturforschenden Gesellschaft. 133 pp.
- Mitui, K., Murakami, N. & Iwatsuki, K. (1989) Chromosomes and Systematics of Asplenium Sect. Hymenasplenium (Aspleniaceae). American Journal of Botany 76 (11): 1689-1697. https://doi.org/10.1002/j.1537-2197.1989.tb15154.x
- Murakami, N. & Hatanaka, S.I. (1988) A revised taxonomy of the Asplenium unilaterale complex in Japan and Taiwan. Journal of the faculty of science, University of Tokyo Section III, 14: 183-199.
- Murakami, N., Yokoyama, J., Cheng, X., Iwasaki, H., Imaichi, R. & Iwatsuki, K. (1998) Molecular α-taxonomy of Hymenasplenium obliquissimum Complex (Aspleniaceae) Based on rbcL Sequence Comparisons. Plant Species Biology 13 (1): 51-56. https://doi.org/10.1111/j.1442-1984.1998.tb00247.x
- Murakami, N. (1995) Systematics and evolutionary biology of the fern genus Hymenasplenium (Aspleniaceae). Journal of Plant Research 108 (2): 257-268. https://doi.org/10.1007/BF02344351
- Murakami, N., Nogami, S., Watanabe, M. & Iwatsuki, K. (1999) Phylogeny of Aspleniaceae inferred from rbcL nucleotide sequences. American Fern Journal 89: 232-343. https://doi.org/10.2307/1547233
- Nakaike, T. (1992) New Flora of Japan: Pteridophytes. Shibundo, Tokyo, 868 pp.
- Ohlsen, D.J., Perrie, L.R., Shepherd, L.D., Brownsey, P.J. & Bayly, M.J. (2014) Phylogeny of the fern family Aspleniaceae in Australasia and the south-western Pacific. Australian Systematic Botany 27: 355-371. https://doi.org/10.1071/SB14043
- Posada, D. (2008) jModelTest: phylogenetic model averaging. Molecular Biology and Evolution 25: 1253-1256. https://doi.org/10.1093/molbev/msn083
- Presl, C.B. (1851) Abhandlungen der Koniglichen Bohmischen Gesellschaft der Wissenschaften. 434 pp.
- Regalado, L. & Prada, C. (2011) The genus Hymenasplenium (Aspleniaceae) in Cuba, including new combinations for the Neotropical species. American Fern Journal 101 (4): 265-281. https://doi.org/10.1640/0002-8444-101.4.265
- Reichstein, T. (1981) Hybrids in European Aspleniaceae (Pteridophyta). Botanica Helvetica 91: 89-139.
- Rodrigo, A.G., Bertels, F., Heled, J., Noder, R., Shearman, H. & Tsai, O.P (2008) The perils of plenty: what are we going to do with these genes? Philosophical transactions of the Royal Society of London. Series B, Biological sciences 363: 3893-3902. https://doi.org/10.1098/rstb.2008.0173
- Rosenberg, N.A. (2007) Statistical tests for taxonomic distinctiveness from observation of monophyly. Evolution 61: 317-323. https://doi.org/10.1111/j.1558-5646.2007.00023.x
- Ross, H.A., Murugan, S. & Li, W.L.S. (2008) Testing the reliability of genetic methods of species identification via simulations. Systematic Biology 57: 216-230. https://doi.org/10.1080/10635150802032990
- Rothfels, C, Pryer, K. & Li, F.W. (2017) Next-generation polyploid phylogenetics: Rapid resolution of hybrid polyploid complexes using PacBio single-molecule sequencing. New Phytologist 213: 413-429. https://doi.org/10.1111/nph.14111
- Sang, T. & Zhong, Y. (2000) Testing hybridization hypotheses based on incongruent gene trees. Systematic Biology 49: 422-434. https://doi.org/10.1080/10635159950127321
- Schneider, H., Navarro-gomez, A., Russell, S.J., Ansell, S., Grundmann, M. & Vogel, J. (2013) Exploring the utility of three nuclear regions to reconstruct reticulate evolution in the fern genus Asplenium. Journal of Systematics and Evolution 51: 142-153. https://doi.org/10.1111/j.1759-6831.2012.00226.x
- Schneider, H., Ranker, T.A., Russell, S.J., Cranfill, R., Geiger, J.M.O., Aguraiuja, R., Wood, K.R., Grundmann, M., Kloberdanz, K. & Vogel, J.C. (2005) Origin of the endemic fern genus Diellia coincides with the renewal of Hawaiian terrestrial life in the Miocene. Proceedings of the Royal Society of London B: Biological Sciences 272: 455-460. https://doi.org/10.1098/rspb.2004.2965
- Schneider, H., Russell, S.J., Cox, C.J., Bakker, F., Henderson, S., Rumsey, F., Barrett, J., Gibby, M. & Vogel, J.C. (2004) Chloroplast phylogeny of Asplenioid ferns based on rbcL and trnL-F spacer sequences (Polypodiidae, Aspleniaceae) and its implications for biogeography. Systematic Botany 29: 260-274. https://doi.org/10.1600/036364404774195476
- Shepherd, L.D., Perrie, L.R. & Brownsey, P.J. (2008) Low copy nuclear DNA sequences reveal a predominance of allopolyploids in a New Zealand Asplenium fern complex. Molecular Phylogenetics and Evolution 49: 240-248. https://doi.org/10.1016/j.ympev.2008.06.015
- Staden, R., Beal, K.F. & Bonfield, J.K. (2000) The staden package, 1998. Bioinformatics Methods and Protocols 132: 115-130. https://doi.org/10.1385/1-59259-192-2:115
- Sugimoto, J. (1966) Keys to Herbaceous Plants of Japan III, Pteridophyta. Rokugatsusha, Osaka, pp. 356-406.
- Swofford, D.L. (2002) PAUP*. Phylogenetic analysis using parsimony (* and other methods). Version 4. Sinauer Associates, Sunderland, Massachusetts.
- Taberlet, P., Gielly, L., Pautou, G. & Bouvet, J. (1991) Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Molecular Biology 17 (5): 1105-1109. https://doi.org/10.1007/BF00037152
- Tagawa, M. (1938) Spicilegium Pteridographiae Asiae Orientalis 15. Acta Phytotaxonomica et Geobotanica 7 (2): 72-87.
- Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F. & Higgins, D.G. (1997) The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 25: 4876-4882. https://doi.org/10.1093/nar/25.24.4876
- Trewick, S.C., Henshaw, T.F., Hausinger, R.P., Lindahl, T. & Sedgwick, B. (2002) Oxidative demethylation by Escherichia coli AlkB directly reverts DNA base damage. Nature 419 (6903): 174-178. https://doi.org/10.1038/nature00908
- Vogel, J.C., Russell, S.J., Rumsey, F.J., Barrett, J.A. & Gibby, M. (1998) Evidence for maternal transmission of chloroplast DNA in the genus Asplenium (Aspleniaceae, Pteridophyta). Plant Biology 111: 247-249. https://doi.org/10.1111/j.1438-8677.1998.tb00704.x
- Wagner, W.H. & Chen, K.L. (1965) Abortion of spores and sporangia as a tool in the detection of Dryopteris Hybrids. American Fern Journal 55: 9-29. https://doi.org/10.2307/1546429
- Xu, K.W., Zhou, X.M., Yin, Q.Y., Zhang, L., Lu, N.T., Knapp, R., Luong, T.T., He, H., Fan, Q., Zhao, W.Y., Gao, X.F., Liao, W.B. & Zhang, L.B. (2018a) A global plastid phylogeny uncovers extensive cryptic speciation in the fern genus Hymenasplenium. Molecular Phylogenetics and Evolution 127: 203-216. https://doi.org/10.1016/j.ympev.2018.05.021
- Xu, K.W., Zhang, L., Lu, N.T., Zhou, X.M., He, H., Luong, T.T., Knapp, R., Liao, W.B. & Zhang, L.B. (2018b) Nine new species of Hymenasplenium (Aspleniaceae) from Asia. Phytotaxa 358 (1): 1-25. https://doi.org/10.11646/phytotaxa.358.1.1
- Xu, K.W., Zhou, X.M., Zhang, L.B. & Liao, W.B. (2018c) Hymenasplenium hastifolium sp. nov. (Aspleniaceae) from a karst cave in western Guangxi, China. Phytotaxa 333 (2): 281-286. https://doi.org/10.11646/phytotaxa.333.2.13
- Xu, K.W., Zhang, L., Rothfels, C., Smith, A., Viane, R., Lorence, D., Wood, K., Chen, C.W., Knapp, R., Zhou, L., Lu, N.T., Zhou, X.M., Wei, H.J., Fan, Q., Chen, S.F., Cicuzza, D., Gao, X.F. & Zhang, L.B. (2019a) A global plastid phylogeny of the fern genus Asplenium (Aspleniaceae). Cladistics 36 (1): 22-71. https://doi.org/10.1111/cla.12384
- Xu, K.W., Lorence, D., Wood, K. & Zhang, L.B. (2019b). A revision of the Hymenasplenium unilaterale subclade (Aspleniaceae; Pteridophyta) with the description of nine new species. Phytotaxa 419 (1): 1-27. https://doi.org/10.11646/phytotaxa.419.1.1
- Xu, K.W., Chen, C.W., Kamau, P. & Zhang, L.B. (2019c). Four new species of the fern genus Hymenasplenium (Aspleniaceae) from Africa and Asia. Phytotaxa 416 (1): 34-42. https://doi.org/10.11646/phytotaxa.416.1.4
- Young, N.D. & Healy, J. (2003) GapCoder automates the use of indel characters in phylogenetic analysis. BMC Bioinformatics 4: 1-6. https://doi.org/10.1186/1471-2105-4-6