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Published May 24, 2012 | Version v1
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Molecular data illuminate cryptic nudibranch species: the evolution of the Scyllaeidae (Nudibranchia: Dendronotina) with a revision of Notobryon

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Pola, Marta, Camacho-García, Yolanda E., Gosliner, Terrence M. (2012): Molecular data illuminate cryptic nudibranch species: the evolution of the Scyllaeidae (Nudibranchia: Dendronotina) with a revision of Notobryon. Zoological Journal of the Linnean Society 165 (2): 311-336, DOI: 10.1111/j.1096-3642.2012.00816.x, URL: http://dx.doi.org/10.1111/j.1096-3642.2012.00816.x

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urn:lsid:plazi.org:pub:A33AFFECFF8904604E4CFF9EFF977579
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http://publication.plazi.org/id/A33AFFECFF8904604E4CFF9EFF977579

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Publication: 10.1093/mollus/eyr036 (DOI)
Has part
Taxonomic treatment: http://treatment.plazi.org/id/5F038794FF8C04654D8EF9B0FAFE7310 (URL)
Taxonomic treatment: http://treatment.plazi.org/id/5F038794FF8C04664D1AF9E5FED374EA (URL)
Taxonomic treatment: http://treatment.plazi.org/id/5F038794FF8F046C4F1DFE46FB2E740C (URL)
Taxonomic treatment: 10.5281/zenodo.5479898 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/5F038794FF85046D4D78FE0BFAB57216 (URL)
Taxonomic treatment: 10.5281/zenodo.10544491 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/5F038794FF8704704ED0FC7CFA9276F9 (URL)
Taxonomic treatment: http://treatment.plazi.org/id/5F038794FF9904734D63FC26FC9C7216 (URL)
Figure: 10.5281/zenodo.5407884 (DOI)
Figure: 10.5281/zenodo.5407886 (DOI)
Figure: 10.5281/zenodo.5407888 (DOI)
Figure: 10.5281/zenodo.5407890 (DOI)
Figure: 10.5281/zenodo.5407894 (DOI)
Figure: 10.5281/zenodo.5407896 (DOI)
Figure: 10.5281/zenodo.5407898 (DOI)
Figure: 10.5281/zenodo.5407902 (DOI)
Figure: 10.5281/zenodo.5407904 (DOI)
Figure: 10.5281/zenodo.5407906 (DOI)
Figure: 10.5281/zenodo.5407908 (DOI)
Figure: 10.5281/zenodo.5407910 (DOI)

References

  • Akaike H. 1974. A new look at the statistical model identification. IEEEE Transactions on Automatic Control 19: 716- 723.
  • Baba K. 1937. Two new species of the nudibranchiate genus Notobryon from Sagami Bay, Japan. Venus, The Japanese Journal of Malacology 7: 165-170.
  • Baba K. 1949. Opisthobranchia of Sagami Bay collected by His Majesty the Emperor of Japan. Tokyo: Iwanami Shoten. 50 pls.
  • Behrens DW, Hermosillo A. 2005. Eastern Pacific nudibranchs. A guide to the opisthobranchs from Alaska to Central America. Monterey, CA: Sea Challengers.
  • Camacho-Garcia Y, Gosliner TM, Valdes A. 2005. Field guide to the sea slugs of the tropical Eastern Pacific. San Francisco, CA: California Academy of Sciences.
  • Camacho-Garcia Y, Ornelas-Gatdula E, Gosliner TM, Valdes A. In press. Phylogeny of the family Aglajidae (Pilsbry, 1895) (Opisthobranchia: Cephalaspidea) inferred from mtDNA and nDNA. Molecular Phylogenetics and Evolution, in press.
  • Carmona L, Malaquias MAE, Gosliner TM, Pola M, Cervera L. 2011. Amphi-atlantic distributions and cryptic species in Sacoglossan sea slugs. Journal of Molluscan Studies 77: 401-412. doi:10.1093/mollus/eyr036.
  • Castresana J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Molecular Biology and Evolution 17: 540-552.
  • Coleman N. 2008. Nudibranch encyclopedia. Springwood: Neville Coleman's Underwater Geographic Pty Ltd, National Library of Australia.
  • Colgan D, McLauchlan A, Wilson GDF, Livingston SP, Edgecombe GD, Macaranas J, Cassis G, Gray MR. 1998. Histone H3 and U2 snRNA DNA sequences and arthropod molecular evolution. Australian Journal of Zoology 46: 419-437.
  • Davison A, Blackie R, Scothern G. 2009. DNA barcoding of stylommatophoran land snails: a test of existing sequences. Molecular Ecology Resources 9: 1092-1101.
  • Debelius H, Kuiter RH. 2007. Nudibranchs of the world. Frankfurt, Germany: IKAN-Unterwaaerarchiv.
  • Drummond AJ, Ashton B, Cheung M, Heled J, Kearse M, Moir R, Stones-Havas S, Thierer T, Wilson A. 2009. Geneious v4.6. Available at: http://www.geneious.com/
  • Drummond AJ, Rambaut A. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology 7: 214.
  • Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32: 1792-1797.
  • Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoe R. 1994. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology 3: 294-299.
  • Gosliner TM. 1987. Nudibranchs of Southern Africa. A guide to the opisthobranch mollusks of southern Africa. Monterey: Sea Challengers.
  • Gosliner TM, Behrens DW, Valdes A. 2008. Indo-Pacific nudibranchs and sea slugs: a field guide to the world's most diverse fauna. Gig Harbor/San Francisco, CA: Sea Challengers/California Academy of Sciences.
  • Gosliner TM, Fahey S. 2011. Previously undocumented diversity and abundance of cryptic species: a phylogenetic analysis of Indo-Pacific Arminidae Rafinesque 1814 (Mollusca: Nudibranchia) with descriptions of twenty new species of Dermatobranchus. Zoological Journal of the Linnean Society 161: 245-256.
  • Greer R. 2000. Notobryon wardi at Fly Point, Port Stephens. [Message in] sea slug forum. Sydney: Australian Museum. Available at: http://www.seaslugforum.net/find/2411
  • Hebert P, Cywinska A, Ball S, deWaard J. 2003. Biological identifications through DNA barcodes. Proceedings of the Royal Society of London B: Biological Sciences 270: 313-322.
  • Hebert P, Stoeckle M, Zemlak T, Francis C. 2004. Identification of birds through DNA barcodes. PLoS Biology 2: e312.
  • Hermosillo A. 2002a. Notobryon wardi? From Mexico. [Message in] sea slug forum. Sydney: Australian Museum. Available at: http://www.seaslugforum.net/find/7943
  • Hermosillo A. 2002b. Notobryon wardi? From west Mexico. [Message in] sea slug forum. Sydney: Australian Museum. Available at: http://www.seaslugforum.net/find/7380
  • Hermosillo A, Behrens DW, Rios Jara E. 2006. Opisthobranquios de Mexico. Guia de babosas marinas del Pacifico, Golfo de California y las islas oceanicas. Guadalajara, Jalisco, Mexico: CONABIO.
  • Johns G, Avise J. 1998. A comparative summary of genetic distances in the vertebrates from the mitochondrial cytochrome b gene. Molecular Biology and Evolution 15: 1481- 1490.
  • Koh DB. 2006. Sea slugs of Korea. Korea: Pungdeung Publishing.
  • Kohler E. 2001. Notobryon wardi from the Philippines. [Message in] sea slug forum. Sydney: Australian Museum. Available at: http://www.seaslugforum.net/find/4900
  • Krug PJ, Morley MS, Asif J, Hellyar LL, Blom WM. 2008. Molecular confirmation of species status for the rare cephalaspidean Melanochlamys lorrainae (Rudman, 1968), and comparison with its sister species M. cylindrica Cheeseman, 1881. Journal of Molluscan Studies 74: 267- 276.
  • Maddison DR, Maddison WP. 2005. Macclade 4., v. 4.08 for OSX. Sunderland, MA: Sinauer Associates.
  • Malaquias MAE, Reid DG. 2009. Tethyan vicariance, relictualism and speciation: evidence from a global molecular phylogeny of the opistobranch genus Bulla. Journal of Biogeography 36: 1760-1777.
  • Nakano R. 2004. Opisthobranchs of Japan Islands. Tokyo: Rutles, Inc.
  • Nylander JA, Ronquist F, Huelsenbeck JP, Nieves- Aldrey JL. 2004. Bayesian phylogenetic analysis of combined data. Systematic Biology 53: 47-67.
  • Odhner NH. 1936. Nudibranchia Dendronotacea-A revision of the system. Memoires du Musee Royal d'Histoire Naturelle de Belgique, series 2, fasc. 3: 1057-1128, pl. 1.
  • Ornelas-Gatdula E, Camacho-Garcia Y, Schrodl M, Padula V, Hooker H, Gosliner TM, Valdes A. In press. Molecular systematics of the 'Navanax aenigmaticus ' species complex (Mollusca, Opisthobranchia): coming full circle. Zoologica Scripta, in press.
  • Palumbi SR, Martin A, Romano S, Owen MacMillan W, Stice L, Grabowski G. 1991. The simple fool's guide to PCR. Honolulu: Department of Zoology, University of Hawaii.
  • Petrusek A. 2002. Scyllaea pelagica from Brac Island, Adriatic Sea. [Message in] sea slug forum. Sydney: Australian Museum. Available at: http://www.seaslugforum.net/find/ 8042
  • Pola M, Gosliner TM. 2010. The first molecular phylogeny of cladobranchian opisthobranchs (Mollusca, Gastropoda, Nudibranchia). Molecular Phylogenetics and Evolution 56: 931-941.
  • Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
  • Stamatakis A, Hoover P, Rougemont J. 2008. A fast bootstrapping algorithm for the RAxML web-servers. Systematics Biology 57: 758-771.
  • Suzuki K. 2000. Opistobranchs of Izu Peninsula. Tokyo: TSB- Britannica.
  • Swofford DL. 2002. PAUP*. Phylogenetic Analysis Using Parsimony (and Other Methods). Version 4. Sunderland, MA: Sinauer Associates.
  • Thompson TE, Brown GH. 1981. Biology and relationships of the nudibranch mollusc Notobryon wardi in South Africa, with a review of the Scyllaeidae. Journal of Zoology 194: 437-444.
  • Valdes A, Hamann J, Behrens D, Dupont A. 2006. Caribbean sea slugs. A field guide to the opisthobranch mollusks from the tropical northwestern Atlantic. Gig Harbor, WA: Sea Challengers Natural History Books, Etc.
  • Williams ST, Reid DG, Littlewood DTJ. 2003. A molecular phylogeny of Littorininae (Gastropoda: Littorinidae): unequal evolutionary rates, morphological parallelism and biogeography of the Southern Ocean. Molecular Phylogenetics and Evolution 28: 60-86.
  • Yokes B. 2002. Scyllaea pelagica from Turkey. [Message in] sea slug forum. Sydney: Australian Museum. Available at: http://www.seaslugforum.net/find/8007
  • Zsilavecz G. 2007. Nudibranchs of the Cape Peninsula and False Bay. Cape Town, South Africa: Southern Underwater Research Group Press.
  • Zwickl D. 2006. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. PhD dissertation, The University of Texas at Austin.