Published August 13, 2021
| Version v1
Journal article
Restricted
Phylogenetic reappraisal and epitypification of Laccaria macrocystidiata (Hydnangiaceae, Basidiomycota)
- 1. Department of Life Sciences and Systems Biology, University of Torino, Viale P.A. Mattioli 25, I-10125 Torino, Italy. & francescodovana@google.com; https://orcid.org/0000-0002-8556-7692
- 2. Department of Life Sciences (Botany), Biology Building, University of Alcalá, 28805 Alcalá de Henares, Madrid, Spain. & gabriel.moreno@uah.es; https://orcid.org/0000-0002-9303-7181
- 3. Via Martiri di via Fani 22, I-61024 Mombaroccio, Italy. & r.para@alice.it; https://orcid.org/0000-0002-3036-8020
- 4. Contrada Calamia, 10, I-87069 San Demetrio Corone, Italy. & carmlav46@gmail.com; https://orcid.org/0000-0002-1298-214X
- 5. Department of Life Sciences and Systems Biology, University of Torino, Viale P.A. Mattioli 25, I-10125 Torino, Italy. & marco.mucciarelli@unito.it; https://orcid.org/0000-0001-8256-7980
Description
Dovana, Francesco, Moreno, Gabriel, Para, Roberto, Lavorato, Carmine, Mucciarelli, Marco (2021): Phylogenetic reappraisal and epitypification of Laccaria macrocystidiata (Hydnangiaceae, Basidiomycota). Phytotaxa 514 (2): 129-139, DOI: 10.11646/phytotaxa.514.2.4, URL: http://dx.doi.org/10.11646/phytotaxa.514.2.4
Files
Linked records
Additional details
Identifiers
- LSID
- urn:lsid:plazi.org:pub:FFE2FFC74961FFCBEC21FF976A78FFE3
References
- Berkeley, M.J. & Broome, C.E. (1883) Notices of British fungi (1989-2027). Annals and Magazine of Natural History 12: 370-374. https://doi.org/10.1080/00222938309459647
- Bolton, J. (1788) An history of funguses, growing about Halifax, Vol. 1. Huddersfield, Halifax, pp. 1-44. https://doi.org/10.5962/bhl.title.5394
- Bon, M. (1983) Tricholomataceae de France et d'Europe occidentale (6eme partie: Tribu Clitocybeae Fay.). Documents Mycologiques 13 (51): 1-53.
- Bon, M. & Contu, M. (1985).Taxons nouveaux. Documents Mycologiques 15 (59): 53.
- Cho, H.J., Park, M.S., Lee, H., Oh, S.Y., Wilson, A.W., Mueller, G.M. & Lim, Y.W. (2018) A systematic revision of the ectomycorrhizal genus Laccaria from Korea. Mycologia 110 (5): 948-961. https://doi.org/10.1080/00275514.2018.1507542
- Contu, M. (1992) Taxa nova Agaricalium. Boletin de la Sociedade Broteriana, Ser. 2, 65: 79-82.
- Contu, M. (2003) Il genere Laccaria (Basidiomycotina, Agaricales) in Italia, con note sulle rimanenti specie in Europa. Bollettino del Gruppo Micologico "G. Bresadola" 46 (1): 5-58.
- Cooke, M.C. (1884) New British fungi. Grevillea 12 (63): 65-70.
- Dovana, F., Contu, M., Angeli, P., Brandi, A. & Mucciarelli, M. (2017) Leucoagaricus ariminensis sp. nov., a lilac species from Italy. Mycotaxon 132 (1): 205-216. https://doi.org/10.5248/132.205
- Doyle, J.J. & Doyle, J.L. (1987) A rapid DNA isolation procedure for small quantities of fresh leaf material. Phytochem Bull 19: 11-15.
- Felsenstein, J. (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791. https://doi.org/10.1111/j.1558-5646.1985.tb00420.x
- Gardes, M. & Bruns, T.D. (1993) ITS primers with enhanced specificity for Basidiomycetes application to the identification of mycorrhizae and rusts. Molecular Ecology 2: 113-118. https://doi.org/10.1111/j.1365-294X.1993.tb00005.x
- Katoh, K., Misawa, K., Kuma, K. & Miyata, T. (2002) MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Research 30: 3059-3066. https://doi.org/10.1093/nar/gkf436
- Kearse, M., Moir, R., Wilson, A., Stones-Havas, S., Cheung, M., Sturrock, S., Buxton, S., Cooper, A., Markowitz, S., Duran, C., Thierer, T., Ashton, B., Meintjes, P. & Drummond, A. (2012) Geneious Basic: an integrated and extendable desktop software platform for the organisation and analysis of sequence data. Bioinformatics 28: 1647-1649. https://doi.org/10.1093/bioinformatics/bts199
- Kirk, P.M., Cannon, P.F., Minter, D.W. & Stalpers, J.A. (2008) Ainsworth & Bisby's dictionary of the fungi. 10th Edition. CABI, Europe, UK, 492 pp. https://doi.org/10.1079/9780851998268.0000
- Kjoller, R. (2006) Disproportionate abundance between ectomycorrhizal root tips and their associated mycelia. FEMS Microbiology Ecology 58 (2): 214-224. https://doi.org/10.1111/j.1574-6941.2006.00166.x
- Kumar, S., Stecher, G., Li, M., Knyaz, C. & Tamura, K. (2018) MEGA X: Molecular Evolutionary Genetics Analysis across computing platforms. Molecular Biology and Evolution 35: 1547-1549. https://doi.org/10.1093/molbev/msy096
- Lanfear, R., Frandsen, P.B., Wright, A.M., Senfeld, T. & Calcott, B. (2017) PartitionFinder 2: new methods for selecting partitioned models of evolution for molecular and morphological phylogenetic analyses. Molecular Biology and Evolution 34: 772-773. https://doi.org/10.1093/molbev/msw260
- Luo, X., Ye, L., Chen, J., Karunarathna, S.C., Xu, J., Hyde, K.D. & Mortimer, P.E. (2016) Laccaria rubroalba sp.nov. (Hydnangiaceae, Agaricales) from Southwestern China. Phytotaxa 284 (1): 41-50. https://doi.org/10.11646/phytotaxa.284.1.4
- Migliozzi, V. & Lavorato, C. (1988) Appunti di micoflora mediterranea. 6. Laccaria affinis fo. macrocystidiata fo. nov. Micologia Italiana 17 (2): 3-6.
- Miller, M.A., Pfeiffer, W. & Schwartz, T. (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In: Proceedings of the Gateway Computing Environments Workshop (GCE). 14 Nov. 2010, New Orleans, LA, pp. 1-8. https://doi.org/10.1109/GCE.2010.5676129
- Moreno, G., Castillo, A. & Thus, H. (2018) Critical revision of type material of Stemonitales (Myxogastria) at the Natural History Museum London (BM). Phytotaxa 344: 149-159. https://doi.org/10.11646/phytotaxa.344.2.3
- Mueller, G.M. (1992) Systematics of Laccaria (Agaricales) in the continental United States and Canada, with discussion on extralimital taxa and descriptions of extant types. Fieldiana Botany New Series 30: 1-158. https://doi.org/10.5962/bhl.title.2598
- Pazmany, D. (1994) Zur Systematik der Gattung Laccaria Bk. et Br. Zeitschrift fur Mykologie 60 (1): 5-12.
- Peck, C.H. (1890) Report of the State Botanist (1889). Annual Report on the New York State Museum of Natural History 43: 51-97.
- Peck, C.H. (1912) Report of the State Botanist 1911. Bulletin of the New York State Museum 157: 1-139.
- Popa, F., Rexer, K.H., Donges, K., Yang, Z.L. & Kost, G. (2014) Three new Laccaria species from Southwest China (Yunnan) Mycological Progress 13: 1105-1117. https://doi.org/10.1007/s11557-014-0998-7
- Popa, F., Jimenez, S.Y.C., Weisenborn, J., Donges, K., Rexer, K.H. & Piepenbring, M. (2016) A new Laccaria species from cloud forest of Fortuna, Panama. Mycological Progress 15: 1-8. https://doi.org/10.1007/s11557-015-1139-7
- Rambaut, A., Drummond, A.J., Xie, D., Baele, G. & Suchard, M.A. (2018) Posterior summarisation in Bayesian phylogenetics using Tracer 1.7. Systematic Biology 67 (5): 901-904. https://doi.org/10.1093/sysbio/syy032
- Ramos, A., Bandala, V.M. & Montoya, L. (2017) A new species and a new record of Laccaria (Fungi, Basidiomycota) found in a relict forest of the endangered Fagus grandifolia var. mexicana. MycoKeys 27: 77-94. https://doi.org/10.3897/mycokeys.27.21326
- Redhead, S.A. & Smith, A.H. (1986) Two new genera of agarics based on Psilocybe corneipes and Phaeocollybia perplexa. Canadian Journal of Botany 64 (3): 643-647. https://doi.org/10.1139/b86-082
- Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D.L., Darling, A., Hohna, S., Larget, B., Liu, L., Suchard, M.A. & Huelsenbeck, J.P. (2012) MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61: 539-542. https://doi.org/10.1093/sysbio/sys029
- Sesli, E., Contu, M. & Helfer, S. (2012) A new record for the Turkish Mycota from Trabzon: Laccaria macrocystidiata (Migl. & Lavorato) Pazmany. Mantar Dergisi/The Journal of Fungus 3 (1-2): 1-3.
- Singer, R. (1967) Notes sur le genre Laccaria. Bulletin de la Societe Mycologiquesde la France 83 (1): 104-123.
- Stamatakis, A. (2014) RAxML Version 8: A tool for Phylogenetic Analysis and Post-Analysis of Large Phylogenies. Bioinformatics 30 (9): 1312-1313. https://doi.org/10.1093/bioinformatics/btu033
- Vellinga, E.C. (1988) Glossary. In: Bas, C., Kuyper, T.W., Noordeloos, M.E. & Vellinga, E.C. (Eds.) Flora Agaricina Neerlandica. Critical monographs on families of agarics and boleti occurring in the Netherlands, vol 1. A.A. Balkema, Rotterdam, pp. 54-64.
- Vellinga, E.C. & Mueller, G.M. (1987) Taxonomic and nomenclatural notes on Laccaria B. & Br. II. Laccaria bicolor, L. fraterna, and L. laccata var. pallidifolia. Persoonia 13: 383-385.
- Vincenot, L., Popa, F., Laso, F., Donges, K., Rexer, K.H., Kost, G., Yang, Z.L., Nara, K. & Selosse, M.A. (2017) Out of Asia: biogeography of fungal populations reveals Asian origin of diversification of the Laccaria amethystine complex, and two new species of violet Laccaria. Fungal Biology 121 (11): 939-955. https://doi.org/10.1016/j.funbio.2017.08.001
- Vilgalys, R. & Hester, M. (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172: 4238-4246. https://doi.org/10.1128/jb.172.8.4238-4246.1990
- Vizzini, A., Contu, M., Kalamees, K., Ercole, E., Musumeci, E., Moreno, G., Manjon, J.L. & Alvarado, P. (2011) On the variability of spore ornamentation in Laccaria tortilis (Basidiomycota, Agaricales). Mycotaxon 116: 217-225. https://doi.org/10.5248/116.217
- Wazny, R. & Kowalski, S. (2017) Ectomycorrhizal fungal communities of silver-fir seedlings regenerating in fir stands and larch forecrops. Trees 31: 929-939. https://doi.org/10.1007/s00468-016-1518-y
- Wang, X.H., Das, K., Bera, I., Chen, Y.H., Bhatt, R.P., Ghosh, A., Hembrom, M.E., Hofstetter, V., Parihar, A., Vizzini, A., Xu, T.M., Zhao, C.L. & Buyck, B. (2019) Fungal Biodiversity Profiles 81-90. Cryptogamie Mycologie 40: 57-95. https://doi.org/10.5252/cryptogamie-mycologie2019v40a5
- White, T.J., Bruns, T.D., Lee, S. & Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis, M.A., Gelfand, D.H., Sninsky, J.J. & White, T.J. (Eds.) PCR Protocols, a guide to methods and applications. Academic press, Orlando, pp. 315-322. https://doi.org/10.1016/B978-0-12-372180-8.50042-1
- Wilson, A.W., Hosaka, K., Perry, B.A. & Mueller, G. (2013) Laccaria (Agaricomycetes, Basidiomycota) from Tibet (Xizang Autonomous Region, China). Mycoscience 54 (6): 406-419. https://doi.org/10.1016/j.myc.2013.01.006
- Wilson, A.W., Hosaka, K. & Mueller, G.M. (2016) Evolution of ectomycorrhizas as a driver of diversification and biogeographic patterns in the model mycorrhizal mushroom genus Laccaria. New Phytologist 213 (4): 1862-1873. https://doi.org/10.1111/nph.14270
- Zimmer, K., Hynson, N.A., Gebauer, G., Allen, E.B., Allen, M.F. & Read, D.J. (2007) Wide geographical and ecological distribution of nitrogen and carbon gains from fungi in pyroloids and monotropoids (Ericaceae) and in orchids. New Phytologist 175: 166-175. https://doi.org/10.1111/j.1469-8137.2007.02065.x