Published May 26, 2016
| Version v.0.2.7
Software
Open
stackr: new functions
- 1. Université Laval
- 2. Universite Laval
Description
v.0.2.7
- Added a NEWS.md file to track changes to the package.
- New function: individuals2strata. Several functions in stackr and assigner requires a strata argument, i.e. a data frame with the individuals and associated groupings. You can do it manually, however, if your individuals have a consistent naming scheme (e.g. SPECIES-POPULATION-MATURITY-YEAR-ID = CHI-QUE-ADU-2014-020), use this function to rapidly create a strata file.
- New function: tidy_genomic_data. Transform common genomic dataset format in a tidy data frame. Used internally in stackr and assigner and might be of interest for users.
- New function: read_long_tidy_wide. Read genomic data frames in long/tidy and wide format. Used internally in stackr and assigner and might be of interest for users.
- New function: stackr_imputations_module. Map-independent imputation of missing genotype using Random Forest or the most frequent category. Impute genotypes or alleles. Used internally in stackr and assigner and might be of interest for users.
- New function: find_duplicate_id Compute pairwise genome similarity to highligh potential duplicate individuals.
Files
stackr-v.0.2.7.zip
Files
(1.9 MB)
Name | Size | Download all |
---|---|---|
md5:a51dd59f2dfa69761238bdd76a764dc3
|
1.9 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/thierrygosselin/stackr/tree/v.0.2.7 (URL)