Published April 1, 2021 | Version v1
Journal article Restricted

Mitogenomics and the genetic differentiation of contemporary Balaena mysticetus (Cetacea) from Svalbard

Description

Bachmann, Lutz, Cabrera, Andrea A, Heide-Jørgensen, Mads Peter, Shpak, Olga V, Lydersen, Christian, Wiig, Øystein, Kovacs, Kit M (2021): Mitogenomics and the genetic differentiation of contemporary Balaena mysticetus (Cetacea) from Svalbard. Zoological Journal of the Linnean Society 191 (4): 1192, DOI: 10.1093/zoolinnean/zlaa082, URL: https://academic.oup.com/zoolinnean/article/191/4/1192/5891458

Files

Restricted

The record is publicly accessible, but files are restricted to users with access.

Linked records

Additional details

Identifiers

LSID
urn:lsid:plazi.org:pub:FF8CFFA341678458FF84FFB8A73CFFC5

Related works

References

  • Allen RC, Keay I. 2006. Bowhead whales in the eastern Arctic, 1611-1911: population reconstruction with historical whaling records. Environmental History 12: 89-113.
  • Alter SE, Rosenbaum HC, Postma LD, Gaines C, Weber D, Egan MG, Lindsay M, Amato G, Dueck L, Brownell RL, Whitridge P, Heide-Jorgensen MP. 2008. Genetic diversity and population differentiation in modern and Holocene bowhead whales from the eastern Canadian Arctic. Santiago de Chile: International Whaling Commission. Report SC/60/BRG31.
  • Alter SE, Rosenbaum HC, Postma LD, Whitridge P, Gaines C, Weber D , Egan MG , Lindsay M , George Amato G, Dueck L, Brownell RL Jr, Heide- Jorgensen MP, Laidre KL, Caccone G, Hancock BL. 2012. Gene flow on ice: the role of sea ice and whaling in shaping Holarctic genetic diversity and population differentiation in bowhead whales (Balaena mysticetus). Ecology and Evolution 2: 2895-2911.
  • Arnason U, Gullberg A, Janke A. 2004. Mitogenomic analyses provide new insights into cetacean origin and evolution. Gene 333: 27-34.
  • Bachmann L, Lindqvist C, Wiig O, Postma LD, Dueck L, Lindsay M, Laidre KL, Heide-Jorgensen MP. 2008. Mitochondrial DNA diversity in the West Greenland stock of bowhead whales (Balaena mysticetus). Santiago de Chile: International Whaling Commission. Report SC/60/BRG28.
  • Berube M, Palsboll P. 1996. Identification of sex in cetaceans by multiplying with three ZFX and ZFY specific markers. Molecular Ecology 5: 283-287.
  • Boertmann D, Merkel F, Durinck L. 2009. Bowhead whales in East Greenland, summers 2006-2008. Polar Biology 32: 1805-1809.
  • Boertmann D, Kyhn, LA, Witting L, Heide-Jorgensen MP. 2015. A hidden getaway for bowhead whales in the Greenland Sea. Polar Biology 38: 1315-1319.
  • Borge T, Bachmann L, Bjornstad G, Wiig O. 2007. Genetic variation in Holocene bowhead whales from Svalbard. Molecular Ecology 16: 2223-2235.
  • Bouckaert R, Heled J, Kuhnert D, Vaughan T, Wu CH, Xie D, Suchard MA, Rambaut A, Drummond AJ. 2014. BEAST 2: a software platform for Bayesian evolutionary analysis. PLoS Computational Biology 10: e1003537.
  • Cabrera AA, Schall E, Berube M, Bachmann L, Berrow S, Best PB, Clapham PJ, Cunha HA, Dalla Rosa L, Dias C, Findlay KP, Haug T, Heide-Jorgensen M-P, Kovacs KM, Landry S, Larsen F, Moreira Lopes X, Lydersen C, Mattila DK, Oosting T, Pace RM, Papetti C, Paspati A, Pastene LA, Prieto R, Ramp C, Jooke Robbins J, Ryan C, Sears R, Secchi ER, Silva MA, Vikingsson G, Wiig O, Oien N, Palsboll PJ. 2018. Strong and lasting impacts of past global warming on baleen whale and prey abundance. bioRxiv 497388.
  • Christensen I, Haug T, Oien N. 1992. Seasonal distribution, exploitation and present abundance of stocks of large baleen whales (Mysticeti) and sperm whales (Physeter macrocephalus) in Norwegian and adjacent waters. ICES Journal of Marine Science 49: 341-355.
  • Citta JJ,Quakenbush LT, Okkonen SR, Druckenmiller ML, Maslowski W, Clement-Kinney J, George JC, Brower H, Small RJ, Ashjian CJ,Harwood LA,Heide-Jorgensen MP. 2015. Ecological characteristics of core-use areas used by Bering-Chukchi-Beaufort (BCB) bowhead whales, 2006-2012. Progress in Oceanography 136: 201-222.
  • Citta JJ, Okkonen SR, Quakenbush LT, Maslowski W, Osinski R, George JC, Small RJ, Brower H Jr, Heide- Jorgensen MP, Harwood LA. 2018. Oceanographic characteristics associated with autumn movements of bowhead whales in the Chukchi Sea. Deep-Sea Research II 152: 121-131.
  • Clark PU, Dyke AS, Shakun JD, Carlson AE, Clark J, Wohlfarth B, Mitrovica JX, Hostetler SW, McCabe AM. 2009. The last glacial maximum. Science 325: 710-714.
  • Cooke J,Reeves R. 2018. Balaena mysticetus (East Greenland- Svalbard-Barents Sea subpopulation). The IUCN Red List of Threatened Species 2018: e.T2472A50348144. http://dx.doi. org/10.2305/IUCN.UK.2018-1.RLTS.T2472A50348144.en.
  • De Boer MN, Janinhoff N, Nijs G, Verdaat H. 2019. Encouraging encounters: unusual aggregations of bowhead whales Balaena mysticetus in the western Fram Strait. Endangered Species Research 39: 51-62.
  • Drummond AJ. 2005. Bayesian coalescent inference of past population dynamics from molecular sequences. Molecular Biology and Evolution 22: 1185-1192.
  • Dyke AS, Savelle JM. 2001. Holocene history of the Bering Sea bowhead whale (Balaena mysticetus) in its Beaufort Sea summer grounds off southwestern Victoria Island, western Canadian Arctic. Quaternary Research 55: 371-379.
  • Dyke AS, Hooper J, Savelle JM. 1996. A history of sea ice in the Canadian Arctic Archipelago based on postglacial remains of the bowhead whale (Balaena mysticetus). Arctic 49: 235-255.
  • Excoffier L, Lischer HEL. 2010. Arlequin suite v.3.5: A new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources 10: 564-567.
  • Ferguson SH, Dueck L, Loseto LL, Luque SP. 2010. Bowhead whale Balaena mysticetus seasonal selection of sea ice. Marine Ecology Progress Series 411: 285-297.
  • Foote AD, Kaschner K, Schultze SE, Garilao C, Ho SYW, Post K, Higham TFG, Stokowska C, van der Es H, Embling CB, Gregersen K, Johansson F, Willerslev E, Gilbert MTP. 2013. Ancient DNA reveals that bowhead whale lineages survived Late Pleistocene climate change and habitat shifts. Nature Communications 4: 1667.
  • Freden C. 1975. Subfossil finds of arctic whales and seals in Sweden. Sveriges Geologiska Undersokningar Arsbok 69: 1-62.
  • Gavrilo MV. 2015. Status of the bowhead whale Balaena mysticetus in the waters of Franz Josef Land Archipelago. San Diego: International Whaling Commission. Report SC/66a/BRG20.
  • Grond J, Plecha, M, Hahn C, Wiig O, Bachmann L. 2019. Mitochondrial genomes of ancient bowhead whales (Balaena mysticetus) from Svalbard. Mitochondrial DNA Part B: Resources 4: 4152-4154.
  • Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O. 2010. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Systematic Biology 59: 307-321.
  • Hahn C, Bachmann L, Chevreux B. 2013. Reconstructing mitochondrial genomes directly from genomic next generation sequencing reads - a baiting and iterative mapping approach. Nucleic Acids Research 41: e129.
  • Heide-Jorgensen MP, Laidre KL, Jensen MV, Dueck L, Postma LD. 2006. Dissolving stock disceteness with satellite tracking: bowhead whales in Baffin Bay. Marine Mammal Science 22: 34-45.
  • Heide-Jorgensen MP, Laidre KL, Quakenbush LT, Citta JJ. 2011. The Northwest Passage opens for bowhead whales. Biology Letters 8: 270-273.
  • Ho SYW, Kolokotronis SO, Allaby RG. 2007. Elevated substitution rates estimated from ancient DNA sequences. Biology Letters 3: 702-705.
  • Jackson JA, Steel DJ, Beerli P, Congdon BC, Olavarria C, Leslie MS, Pomilla C, Rosenbaum H, Baker CS. 2014. Global diversity and oceanic divergence of humpback whales (Megaptera novaeangliae). Proceedings of the Royal Society B 281: 20133222.
  • Kovacs KM , Lydersen C , Vacquie-Garcia J , Shpak O, Glazov D, Heide-Jorgensen MP. 2020. The endangered Spitsbergen bowhead whales' secrets revealed after hundreds of years in hiding. Biology Letters 16: 20200148.
  • Lanfear R, Frandsen PB, Wright AM, Senfeld T, Calcott B. 2017. PartitionFinder 2: new methods for selecting partitioned models of evolution for molecular and morphological phylogenetic analyses. Molecular Biology and Evolution 34: 772-773.
  • Lefort V, Longueville JE, Gascuel O. 2017. SMS: Smart model selection in PhyML. Molecular Biology and Evolution 34: 2422-2424.
  • Lydersen C, Freitas C, Wiig O , Bachmann L , Heide Jorgensen M-P, Swift R, Kovacs KM. 2012. Lost highway not forgotten: satellite tracking of a bowhead whale (Balaena mysticetus) from the critically endangered Spitsbergen stock. Arctic 65: 76-86.
  • Matthews CJD, Breed GA, LeBlanc B, Ferguson SH. 2020. Killer whale presence drives bowhead whale selection for sea ice in Arctic seascapes of fear. Proceedings of the National Academy of Sciences of the USA 117: 6590-6598.
  • McLeod BA, Frasier TR, Dyke AS, Savelle JM, White BN. 2012. Examination of ten thousand years of mitochondrial DNA diversity and population demographics in bowhead whales (Balaena mysticetus) of the Central Canadian Arctic. Marine Mammal Science 28: 426-443.
  • Meschersky IG, Chichkina AN, Shpak OV, Rozhnov VV. 2014. Molecular genetic analysis of the Shantar Summer Group of bowhead whales (Balaena mysticetus L.) in the Okhotsk Sea. Russian Journal of Genetics 50: 395-405.
  • Nyhus ES, Lindqvist C, Kovacs K, Lydersen C, Wiig O, Bachmann L. 2016. Mitogenomes of contemporary Spitsbergen stock bowhead whales (Balaena mysticetus). Mitochondrial DNA Part B: Resources 1: 898-900.
  • Paradis E. 2010. Pegas: an R package for population genetics with an integrated-modular approach. Bioinformatics 26: 419-420.
  • Phillips CD, Hoffman JI, George JC, Suydam RS, Huebinger RM, Patton JC, Bickham JW. 2013. Molecular insights into the historic demography of bowhead whales: understanding the evolutionary basis of contemporary management practices. Ecology and Evolution 3: 18-37.
  • R-Development Core Team. 2016. R: a language and environment for statistical computing. Vienna: R Foundation for Statistical Computing.
  • Rambaut A, Drummond AJ, Xie D, Baele G, Suchard MA. 2018. Posterior summarization in Bayesian phylogenetics using Tracer 1.7. Systematic Biology 67: 901-904.
  • Raymond M, Rousset F. 1995. An exact test for population differentiation. Evolution 49: 1280-1283.
  • Reeves R, Mitchell E, Mansfield A, McLaughlin M. 1983. Distribution and migration of the bowhead whale, Balaena mysticetus, in the eastern North American Arctic. Arctic 36: 5-64.
  • Rooney AP, Honeycutt RL, Derr JN. 2001. Historical population size change of bowhead whales inferred from DNA sequence polymorphism data. Evolution 55: 1678-1685.
  • Rosenbaum HC, Brownell RL Jr, Brown MW, Schaeff C, Portway V, Goto M, Best PB, Clapham PJ, Hamilton P, Moore M , Payne R , Rowntree V , Tynan CT , Bannister JL, DeSalle R. 2000. World-wide genetic differentiation of Eubalaena: questioning the number of right whale species. Molecular Ecology 9: 1793-1802.
  • Rozas J, Ferrer-Mata A, Sanchez-DelBarrio JC, Guirao- Rico S, Librado P, Ramos-Onsins SE, Sanchez-Gracia A. 2017. DnaSP 6: DNA sequence polymorphism analysis of large data sets. Molecular Biology and Evolution 34: 3299-3302.
  • Southwell T. 1898. The migration of the right whale (Balaena mysticetus). Part I. In the Greenland waters. Natural Science 12: 397-414.
  • Stafford KM, Lydersen C, Wiig O, Kovacs K. 2018. Extreme diversity in the songs of Spitsbergen's bowhead whales. Biology Letters 14: 20180056.
  • Templeton AR, Crandall KA, Sing CF. 1992. A cladistic
  • Vacquie-Garcia J, Lydersen C, Marques TA, Aars J, Ahonen H, Skern-Mauritzen M, Oien N, Kovacs KM. 2017. Late summer distribution and abundance of ice-