Published August 21, 2019
| Version v1
Lesson
Open
Tutorial: Bayesian Regression in R (using brms)
Description
This tutorial provides the reader with a basic tutorial on how to perform a Bayesian regression in brms, using Stan instead of as the MCMC sampler. Throughout this tutorial, the reader will be guided through importing data files, exploring summary statistics and regression analyses. Here, we will exclusively focus on Bayesian statistics.
Notes
Since we continuously improve the tutorials, let us know via Github (https://github.com/Rensvandeschoot/Tutorials) if you discover mistakes, or if you have additional resources we can refer to.
Files
R-regression-bayesian--using-brms-.md
Files
(798.8 kB)
| Name | Size | Download all |
|---|---|---|
|
md5:188a923270c438df9051da4672ad2bff
|
30.8 kB | Download |
|
md5:6d46bcd48c5b0f7bd597e1a0aabff6d9
|
707.2 kB | Download |
|
md5:7739b9d465514373fc9481c33b4afba8
|
34.3 kB | Preview Download |
|
md5:fea1d881fc78587e6b15ddaa12fbde29
|
17.7 kB | Preview Download |
|
md5:aa8b01b19cce9237bf657533bbeee924
|
8.8 kB | Preview Download |
Additional details
Related works
- Cites
- Dataset: 10.5281/zenodo.3962123 (DOI)
References
- Benjamin, D. J., Berger, J., Johannesson, M., Nosek, B. A., Wagenmakers, E.,… Johnson, V. (2017, July 22). Redefine statistical significance. Retrieved from psyarxiv.com/mky9j
- Greenland, S., Senn, S. J., Rothman, K. J., Carlin, J. B., Poole, C., Goodman, S. N. Altman, D. G. (2016). Statistical tests, P values, confidence intervals, and power: a guide to misinterpretations. European Journal of Epidemiology 31 (4). https://doi.org/10.1007/s10654-016-0149-3
- Hoffman, M. D., & Gelman, A. (2014). The No-U-turn sampler: adaptively setting path lengths in Hamiltonian Monte Carlo. Journal of Machine Learning Research, 15(1), 1593-1623.
- van de Schoot R, Yerkes MA, Mouw JM, Sonneveld H (2013) What Took Them So Long? Explaining PhD Delays among Doctoral Candidates. PLoS ONE 8(7): e68839. https://doi.org/10.1371/journal.pone.0068839
- Trafimow D, Amrhein V, Areshenkoff CN, Barrera-Causil C, Beh EJ, Bilgi? Y, Bono R, Bradley MT, Briggs WM, Cepeda-Freyre HA, Chaigneau SE, Ciocca DR, Carlos Correa J, Cousineau D, de Boer MR, Dhar SS, Dolgov I, G?mez-Benito J, Grendar M, Grice J, Guerrero-Gimenez ME, Guti?rrez A, Huedo-Medina TB, Jaffe K, Janyan A, Karimnezhad A, Korner-Nievergelt F, Kosugi K, Lachmair M, Ledesma R, Limongi R, Liuzza MT, Lombardo R, Marks M, Meinlschmidt G, Nalborczyk L, Nguyen HT, Ospina R, Perezgonzalez JD, Pfister R, Rahona JJ, Rodr?guez-Medina DA, Rom?o X, Ruiz-Fern?ndez S, Suarez I, Tegethoff M, Tejo M, ** van de Schoot R** , Vankov I, Velasco-Forero S, Wang T, Yamada Y, Zoppino FC, Marmolejo-Ramos F. (2017) Manipulating the alpha level cannot cure significance testing – comments on "Redefine statistical significance" PeerJ reprints 5:e3411v1 https://doi.org/10.7287/peerj.preprints.3411v1