BASiCS workflow: a step-by-step analysis of expression variability using single cell RNA sequencing data
- 1. University of Edinburgh
- 2. University of Zurich
- 3. European Molecular Biology Laboratory
Description
Files used in the generation of the manuscript "BASiCS workflow: a step-by-step analysis of expression variability using single cell RNA sequencing data". These files are MCMC chains generated using BASiCS, gene annotations, and scripts used to generate these files. "chain_(naive|active).Rds" files are MCMC chains for the active and naive cell populations in the manuscript. "chain_naive_nospikes.Rds" is an MCMC chain for naive cells run using BASiCS with the WithSpikes=FALSE setting. "chains.R" and "Makefile" were used to generate these files using the docker image "alanocallaghan/bocker:0.1.0", hosted on hub.docker.com
Alternatively, "Dockerfile" can be used to create an equivalent image.
"TableRef_naive_nospikes.txt" is a table containing the frequency that each gene was used as a reference gene during the generation of "chain_naive_nospikes.Rds".
Files
TableRef_naive_nospikes.txt
Files
(354.4 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:8e046d96aec735c6526737923136126c
|
117.1 MB | Download |
|
md5:2348c8fcfec682ace58d61d39a858cfd
|
119.1 MB | Download |
|
md5:d49689d5480291a6f6790209a6e6cdef
|
117.5 MB | Download |
|
md5:30f82744a365b401be886e6d45954470
|
7.2 kB | Download |
|
md5:5b2d15f153450dba8f5dafd2094282f4
|
1.3 kB | Download |
|
md5:2a2e99b0051e89d42f6f8477e7474cda
|
681.4 kB | Download |
|
md5:98fe31fbe1af687f8933937ecde82a53
|
422 Bytes | Download |
|
md5:eda9f4f1ad2fcf59aedce7ab3e5eb072
|
34.1 kB | Preview Download |