Data collection for the TrackMate tracking software
Published August 19, 2021 | Version v1
Dataset Open

Segmenting cells in a spheroid in 3D using 2D StarDist within TrackMate

Creators

  • 1. Institut Pasteur
  • 2. University of Turku

Description

3D image of cells in a spheroid, imaged on a confocal microscope, used in a tutorial to demonstrate how to hack TrackMate to segment cells in 3D using the 2D segmentation algorithms it ships.

Image by Guillaume Jacquemet.

For more details see https://imagej.net/plugins/trackmate/trackmate-stardist#generation-of-3d-labels-by-tracking-2d-labels-using-trackmate

 

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