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Published March 8, 2018 | Version v1
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Mitochondrial genetic variation within and between Holbrookia lacerata lacerata and Holbrookia lacerata subcaudalis, the spot-tailed earless lizards of Texas

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Roelke, Corey E., Maldonado, Jose A., Pope, Blake W., Firneno, Thomas J., Laduc, Travis J., Hibbitts, Toby J., Ryberg, Wade A., Rains, Nathan D., Fujita, Matthew K. (2018): Mitochondrial genetic variation within and between Holbrookia lacerata lacerata and Holbrookia lacerata subcaudalis, the spot-tailed earless lizards of Texas. Journal of Natural History 52 (13-16): 1017-1027, DOI: 10.1080/00222933.2018.1436726, URL: http://dx.doi.org/10.1080/00222933.2018.1436726

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urn:lsid:plazi.org:pub:FF99BF2C3D46FF8F1825DD0D3B6AD63F

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Figure: 10.5281/zenodo.5174393 (DOI)
Figure: 10.5281/zenodo.5174395 (DOI)
Figure: 10.5281/zenodo.5174397 (DOI)

References

  • Axtell RA. 1956. A solution to the long neglected Holbrookia lacerata problem, and the description of two new subspecies of Holbrookia. Bull Chicago Acad Sci. 10:163-181.
  • Axtell RA. 1958. A monographic revision of the Iguanid genus Holbrookia [Ph.D Dissertation]. The University of Texas.
  • Bernt M, Donath A, Juhling F, Externbrink F, Florentz C, Fritzsch G, Putz J, Middendorf M, Stadler P. 2013. MITOS: improved de novo metazoan mitochondrial genome annotation. Mitogenomics and Metazoan evolution. Mol Phylo Evol. 69:313-319.
  • Dayrat B. 2005. Towards integrative taxonomy. Biol J Linn Soc. 85:407-415.
  • Drummond A, Suchard M, Xie D, Rambaut A. 2012. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol Biol Evol. 29:1969-1973.
  • Fujisawa T, Barraclough T. 2013. Delimiting species using single-locus data and the generalized mixed yule coalescent approach: a revised method and evaluation on simulated data sets. Sys Bio. 62(5):707-724.
  • Fujita M, Leache A, Burbrink F, McGuire J, Moritz C. 2012. Coalescent-based species delimitation in an integrative taxonomy. Trends Ecol Evol. 27(9):480-488.
  • Hasegawa M, Kishino H, Yano T. 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J of molec Evol. 22(2):160-174.
  • Hibbitts TD, Hibbitts TJ. 2015. Texas lizards. Austin (TX): University of Texas Press; p. 333.
  • iNaturalist.org web application at http://www.inaturalist.org. Searched for Holbrookia lacerata. [accessed 2017 Aug 16]. https://www.inaturalist.org/taxa/36352-Holbrookia-lacerata
  • Lanfear R, Calcott B, Ho S, Guindon S. 2012. PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Mol Biol Evol. 29(6):1695-1701.
  • Leache A, Fujita M, Minin V, Bouckaert R. 2014. Species delimitation using genome-wide SNP data. Sys Bio. 63(4):534-542.
  • Padial J, Miralles A, De la Riva I, Vences M. 2010. The integrative future of taxonomy. Front Zool. 7:16.
  • Piganeau G, Eyre-Walker A. 2009. Evidence for variation in the effective population size of animal mitochondrial DNA. PLoS One. 4(2):e4396.
  • Portik D, Leache A, Rivera D, Barej M, Hirschfeld M, Burger M, Rodel M-O, Blackburn D, Fujita M. Forthcoming 2018. Evaluating mechanisms of diversification in a Guineo-Congolian forest frog using demographic model selection. Mol Ecol.
  • Rannala B, Yang Z. 2003. Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci. Genetics. 164:1645-1656.
  • Streicher J, Devitt T, Goldberg C, Malone J, Blackmon B, Fujita M. 2014. Diversifications and asymmetrical gene flow across a heterogeneous landscape: lineage sorting dynamics in polytypic barking frogs (Anura: Craugastoridae). Mol Ecol. 23:3273-3291.
  • Sukumaran J, Knowles L. 2017. Multispecies coalescent delimits structure, not species. Proc of the Nat Acad of Sci. 114(7):1607-1612.
  • Talavera G, Dinca V, Vila R. 2013. Factors affecting species delimitations with the GMYC model: insights from a butterfly survey. Methods Ecol Evol. 4:1101-1110.
  • Tamura K, Nei M. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol. 10:512-526.
  • Wiens JJ, Kuczynski CA, Arif S, Reeder TW. 2010. Phylogenetic relationships of phrynosomatid lizards based on nuclear and mitochondrial data, and a revised phylogeny for Sceloporus. Mol Phylogen Evol. 54:150-161.
  • Yang Z, Rannala B. 2010. Bayesian species delimitation using multilocus sequence data. Proc of the Nat Acad of Sci. 107:9264-9269.
  • Zharkikh A. 1994. Estimation of evolutionary distances between nucleotide sequences. J Mol Evol. 39(3):315-329.