Partitioned linkage disequilibrium scores for active regulatory elements in ROADMAP datasets

Partitioned linkage disequilibrium scores for active regulatory elements in ROADMAP epigenomics datasets, to accompany paper Lynall et al 2021

Accompanying code available at https://github.com/maryellenlynall/psychimmgen2021

Active regulatory elements annotations are a union of the following IDEAS annotations, representing enhancers and active promoters (see http://bx.psu.edu/~yuzhang/Roadmap_ideas/trackDb_test.txt for IDEAS track hubs): 

4_Enh
6_EnhG
8_TssAFlnk
10_TssA
14_TssWk
17_EnhGA

tissues.txt provides the list of ROADMAP tissues 

The partitioned_LD_scores folder contains partitioned LD scores in a format suitable for stratified LDSC analysis for European participants