Published February 28, 2023
| Version 0.3.0
Software
Open
BiomedSciAI/fuse-med-ml: 0.3.0
Creators
- 1. IBM Research
- 2. Hebrew University
- 3. hot_budr
- 4. IBM
- 5. Imgbot
- 6. @dyte-in | @TEC-VIT
Description
Alert: major revision
FuseMedML new version introduces a few minor backward compatibility breaks. Including new installation instructions.
What's Changed- Add vit isic by @smartdanny in https://github.com/BiomedSciAI/fuse-med-ml/pull/221
- remove protobuf from dependencies by @alex-golts in https://github.com/BiomedSciAI/fuse-med-ml/pull/225
- Added more descriptive error messages and hints for common usage mistakes by @YoelShoshan in https://github.com/BiomedSciAI/fuse-med-ml/pull/226
- support arbitrary (not sequential and even not ints) balanced class values by @mosheraboh in https://github.com/BiomedSciAI/fuse-med-ml/pull/227
- update DL readme according to JOSS reviewer comments by @alex-golts in https://github.com/BiomedSciAI/fuse-med-ml/pull/232
- Some changes from DTI task (Add doc' and some small features) by @SagiPolaczek in https://github.com/BiomedSciAI/fuse-med-ml/pull/233
- knight data download script by @alex-golts in https://github.com/BiomedSciAI/fuse-med-ml/pull/235
- raise an exception in case of str input/outputs by @smartdanny in https://github.com/BiomedSciAI/fuse-med-ml/pull/234
- Auc metric fix by @avihu111 in https://github.com/BiomedSciAI/fuse-med-ml/pull/237
- CICD fix by @mosheraboh in https://github.com/BiomedSciAI/fuse-med-ml/pull/239
- fix learning rate and added config options by @liamhazan in https://github.com/BiomedSciAI/fuse-med-ml/pull/238
- Ensemble of multi-modal survival models by @michalozeryflato in https://github.com/BiomedSciAI/fuse-med-ml/pull/231
- add downsample option to BatchSamplerDefault by @mosheraboh in https://github.com/BiomedSciAI/fuse-med-ml/pull/246
- Ehr transformer ICU example by @ellabarkan in https://github.com/BiomedSciAI/fuse-med-ml/pull/245
- Simple MNIST Example by @smartdanny in https://github.com/BiomedSciAI/fuse-med-ml/pull/240
- Ehr transformer example by @ellabarkan in https://github.com/BiomedSciAI/fuse-med-ml/pull/256
- a more configureable resnet3d implementation by @avihu111 in https://github.com/BiomedSciAI/fuse-med-ml/pull/257
- not strict mode in ProjectPatchesTokenizer by @avihu111 in https://github.com/BiomedSciAI/fuse-med-ml/pull/260
- allow non-int sample ids in DatasetDefault by @alex-golts in https://github.com/BiomedSciAI/fuse-med-ml/pull/259
- support not specifying number of channels in ModelMultiHead by @alex-golts in https://github.com/BiomedSciAI/fuse-med-ml/pull/244
- update JOSS paper citation and badge by @alex-golts in https://github.com/BiomedSciAI/fuse-med-ml/pull/263
- support shallow copy of pipelines by @michalozeryflato in https://github.com/BiomedSciAI/fuse-med-ml/pull/262
- fix bug with specific binary input format by @alex-golts in https://github.com/BiomedSciAI/fuse-med-ml/pull/264
- Ndict support hydra by @michalozeryflato in https://github.com/BiomedSciAI/fuse-med-ml/pull/265
- add props to dataset and pipelines + small fix to cacher by @michalozeryflato in https://github.com/BiomedSciAI/fuse-med-ml/pull/266
- optimized train time for a use case of small samples and large batch by @mosheraboh in https://github.com/BiomedSciAI/fuse-med-ml/pull/268
- add multi-label metric cladd and func by @egozi in https://github.com/BiomedSciAI/fuse-med-ml/pull/269
torchvisionversion upper bound fix by @SagiPolaczek in https://github.com/BiomedSciAI/fuse-med-ml/pull/254- Additional model -
CrossAttentionTransformerEncoderby @SagiPolaczek in https://github.com/BiomedSciAI/fuse-med-ml/pull/251 - ddp_fix by @smartdanny in https://github.com/BiomedSciAI/fuse-med-ml/pull/270
NDictoptimization by @SagiPolaczek in https://github.com/BiomedSciAI/fuse-med-ml/pull/271- remove examples. prefix by @alex-golts in https://github.com/BiomedSciAI/fuse-med-ml/pull/276
- make examples subpackage (fuse_examples) by @mosheraboh in https://github.com/BiomedSciAI/fuse-med-ml/pull/277
- Fixes for the Hello World notebook by @SagiPolaczek in https://github.com/BiomedSciAI/fuse-med-ml/pull/275
- Pl model save + export the entire dataset (all keys) to dataframe by @mosheraboh in https://github.com/BiomedSciAI/fuse-med-ml/pull/281
- @ellabarkan made their first contribution in https://github.com/BiomedSciAI/fuse-med-ml/pull/245
Full Changelog: https://github.com/BiomedSciAI/fuse-med-ml/compare/0.2.9...0.3.0
Files
BiomedSciAI/fuse-med-ml-0.3.0.zip
Files
(4.1 MB)
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Additional details
Related works
- Is supplement to
- https://github.com/BiomedSciAI/fuse-med-ml/tree/0.3.0 (URL)